View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_3 (Length: 807)
Name: NF8969_low_3
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 140 - 790
Target Start/End: Original strand, 3854900 - 3855543
Alignment:
| Q |
140 |
gttgttgttaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataa |
239 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3854900 |
gttgttgctaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgacaa |
3854999 |
T |
|
| Q |
240 |
tgataataatattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagttgtctgtactggcgtgacatagttaaacaat |
339 |
Q |
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| T |
3855000 |
t------aatattcctcatcctcttt-ctcaaagctaagctccacatgagttaaattgaaaaactgagttgtctgtactggcgcgacatagttaaacaat |
3855092 |
T |
|
| Q |
340 |
ttcaagggtgtttgtaccgcttcttgtgcgcgtagaaactccacattgtaaaacaatttcaagggnnnnnnntaagaaatagaagaagagtcagaaatgt |
439 |
Q |
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||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3855093 |
ttcaagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaataagaaatagaagaagagtcagaaatgt |
3855192 |
T |
|
| Q |
440 |
gggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttat |
539 |
Q |
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| T |
3855193 |
gggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttat |
3855292 |
T |
|
| Q |
540 |
gagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggc |
639 |
Q |
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| T |
3855293 |
gagtaaatcctcgagaaatggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttaagtttgggc |
3855392 |
T |
|
| Q |
640 |
aaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggca |
739 |
Q |
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|||||||||| | ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
3855393 |
aaatgagtaagatatttatcaacatggtatatcattaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgggacctggga |
3855492 |
T |
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| Q |
740 |
agcaaatgggggtagtggaagagtgctgcaaaaaagtgagatcgacatgat |
790 |
Q |
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| T |
3855493 |
agcaaatgggggtagtggaagagtgctgcaaaaaagtgagatcgacatgat |
3855543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3854791 - 3854833
Alignment:
| Q |
19 |
atgaattatgatcatcaacgcttaatccatagcctcctcctcc |
61 |
Q |
| |
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| T |
3854791 |
atgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 148 - 788
Target Start/End: Complemental strand, 4141730 - 4141082
Alignment:
| Q |
148 |
taatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataatgataata |
247 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
4141730 |
taatatgatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataat------- |
4141638 |
T |
|
| Q |
248 |
atattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagt------------------tgtctgtactggcgtgacata |
329 |
Q |
| |
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||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||| ||| |||||||| | |||||| |
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| T |
4141637 |
--attcctcatcctcctt-ctcaaagctaagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgtttgtactggtgcgacata |
4141541 |
T |
|
| Q |
330 |
gttaaacaatttcaagggtgtttgtaccgcttcttgtgcgcgtagaaactccacattgtaaaacaatttcaagggnnnnnnntaagaaatagaagaagag |
429 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
4141540 |
gtcaaacaatttcaagggtgtttgtaccgcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagag |
4141441 |
T |
|
| Q |
430 |
tcagaaatgtgggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctga |
529 |
Q |
| |
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|| |||||||||| ||||||||| ||||||||||||| ||| |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| ||| |
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| T |
4141440 |
tcggaaatgtgggctttgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcattggtggtga |
4141341 |
T |
|
| Q |
530 |
cattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagtttttt |
629 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
4141340 |
cattttttatgagcaaatcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatgaacctttgtcatgtggagtttttc |
4141241 |
T |
|
| Q |
630 |
gagttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatg |
729 |
Q |
| |
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||| | ||||| || |||| || || || |||| || ||| ||||| |||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
4141240 |
gaggttgggcagattagtataagattcataaacacagtctattgttaacaccccattcccattcaagttcaaaacaacaagagttgaacaa---agaatg |
4141144 |
T |
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| Q |
730 |
ccatgtggcaagcaaatgggggtagtggaagag---tgctgcaaaaaagtgagatcgacatg |
788 |
Q |
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|| ||||||| |||| ||||||| ||||||| |||||||||||||||| ||| ||||| |
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| T |
4141143 |
ttatttggcaagtaaatcggggtagcggaagagtgctgctgcaaaaaagtgaaatcaacatg |
4141082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 4141866 - 4141819
Alignment:
| Q |
19 |
atgaattatgatcatcaacgcttaatccatagcctcctcctcctccga |
66 |
Q |
| |
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| T |
4141866 |
atgaattatgatcatcgccgcttaatccataacctactcctcctccga |
4141819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 529 - 692
Target Start/End: Complemental strand, 1882095 - 1881932
Alignment:
| Q |
529 |
acattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttt |
628 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||| |
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| T |
1882095 |
acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatgaacccttgtgaagtggagttttt |
1881996 |
T |
|
| Q |
629 |
tgagttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccatt |
692 |
Q |
| |
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|||| | |||||||| ||||| | |||||||||| || ||||||||||||||||||||||| |
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| T |
1881995 |
tgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagaccccattcccatt |
1881932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 529 - 648
Target Start/End: Complemental strand, 41541889 - 41541770
Alignment:
| Q |
529 |
acattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttt |
628 |
Q |
| |
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|||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||| |
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| T |
41541889 |
acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatgaacccttgtgaagtggagttttt |
41541790 |
T |
|
| Q |
629 |
tgagttcgggcaaatgagta |
648 |
Q |
| |
|
|||| | |||||||| |||| |
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| T |
41541789 |
tgaggttgggcaaattagta |
41541770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Complemental strand, 41541991 - 41541946
Alignment:
| Q |
421 |
gaagaagagtcagaaatgtgggatttgagcaaattggggaagggtt |
466 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41541991 |
gaagaagagtcagaaatgtgggctttgagcaaattggggaagggtt |
41541946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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