View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_32 (Length: 388)
Name: NF8969_low_32
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 5693729 - 5694098
Alignment:
| Q |
16 |
taaaaatgctgcagcaatcggaggcttcgccagcggtacagcttctggtggagcccccttagctcgccttgccatatacaaagcatgttggccaatcaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5693729 |
taaaaatgctgcagcaatcggaggcttcgccagcggtacagcctctggcggagcccccttagcccgccttgccatatacaaagcatgttggccaatcaaa |
5693828 |
T |
|
| Q |
116 |
ggaaaaccaaaaaatgaaggaaacacttgcgcaaacattgatatgcttaaagctatagatgatgcaattgaagatggtgttgatgttttaagcatttcca |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5693829 |
ggaaaaccaaaaaacgaaggaaacacttgcgcaaacattgatatgcttaaagctatagatgatgcaattgaagatggtgttgatgttttaagcatttcca |
5693928 |
T |
|
| Q |
216 |
tagggcattatggtccattgaaatatgaagatgatgtgattgctaaaggtgcattacaagctgtaaggaaaaacattgtggttgtttgtagtgctggaaa |
315 |
Q |
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| T |
5693929 |
tagggcattatggtccattgaaatatgaagatgatgtgattgctaagggtgcattacaagctgtaaggaaaaacattgtggttgtttgtagtgctggaaa |
5694028 |
T |
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| Q |
316 |
ttttggtccttttccacatagtttgtcaaatcctgccccttggatcatcactgttggtgc-agtactgtc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5694029 |
ttttggtccttttccacatagtttgtcaaatcctgccccttggatcatcactgttggtgctagtactgtc |
5694098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 5683855 - 5684222
Alignment:
| Q |
18 |
aaaatgctgcagcaatcggaggcttcgccagcggtacagcttctggtggagcccccttagctcgccttgccatatacaaagcatgttggccaatcaaagg |
117 |
Q |
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||||||| ||||| ||||||||||||| || || ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
5683855 |
aaaatgcatcagcactcggaggcttcgctagaggcacagcctctggtggagccccattagctcgccttgcaatatacaaagcatgttggccaataaaagg |
5683954 |
T |
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| Q |
118 |
aaaaccaaaaaatgaaggaaacacttgcgcaaacattgatatgcttaaagctatagatgatgcaattgaagatggtgttgatgttttaagcatttccata |
217 |
Q |
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||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
5683955 |
aaaaccaaaaaatgatggaaatgtttgcactaacattgatatgcttaaagctatagatgatgcaattgaagatggtgttgatgttataaacctttccatt |
5684054 |
T |
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| Q |
218 |
gggcattatggtccattgaaatatgaagatgatgtgattgctaaaggtgcattacaagctgtaaggaaaaacattgtggttgtttgtagtgctggaaatt |
317 |
Q |
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||| | || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5684055 |
gggtttcctgcgccattgaaatatgaggatgatgtgattgctaagggtgcattacaagctgtaaggaaaaacattgttgttgtttgtagtgctggaaatg |
5684154 |
T |
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| Q |
318 |
ttggtccttttccacatagtttgtcaaatcctgccccttggatcatcactgttggtgc-agtactgtc |
384 |
Q |
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||| |||| ||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
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| T |
5684155 |
ctggcccttctcctcatagtttgtcaaatccttccccttggatcatcacggttggtgctagtactgtc |
5684222 |
T |
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