View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_36 (Length: 356)
Name: NF8969_low_36
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 32015768 - 32016096
Alignment:
| Q |
14 |
cagagatcaataacaggacttgttacattatatttgcatcagagtgtgaaggatgcatattcttatggtttctgttattttctatttggattgagctaat |
113 |
Q |
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| T |
32015768 |
cagagatcaataacaggactttttacattatatttgcatcagagtgtgaaggatgcatattcttatggtttctgttattttctatttggattgagctaat |
32015867 |
T |
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| Q |
114 |
cattggtgttgatctagttagatattttgctcattacattaagcttaatcacaatctaagggtag-nnnnnnnnnnnctgcactgcctccaacaattgtg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
32015868 |
cattggtgttgatctagttagatattttgctcattacattaagcttaatcacaatctaagggtagaaaaaagaaaaactgcactgcctccagcaattgtg |
32015967 |
T |
|
| Q |
213 |
cagtaaacagattttcgagatatcttagcattgttcaagcgctcactgtcctcttcccttctgttagacatgggcttagttcgctaattttgaaattgac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32015968 |
cagtaaacagattttcgagatatcttagcattgttcaagcgctcactgtcctcttcccttctgttagacatgggcttagttcgctaattttgaaattgac |
32016067 |
T |
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| Q |
313 |
aactattcggttgcaaatgcgatacttat |
341 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
32016068 |
aactattcggtagcaaatgcgatacttat |
32016096 |
T |
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