View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_37 (Length: 354)
Name: NF8969_low_37
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 13261108 - 13260769
Alignment:
| Q |
1 |
caccaagcgaagatgaaaatatggttgagggagaagctgagatagtgagtgataaatccttgtatagtgtgaacattttagatgtttcttccaaggaatc |
100 |
Q |
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| T |
13261108 |
caccaagtgaagatgaaaatatggttgagggagaagctgagatagtgagtgataaatccttgtatagtgtgaattctttagatgtttcttccaaggaatc |
13261009 |
T |
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| Q |
101 |
cagtggccattcggttgaacaagttcaaaatttggatgataataatggtgctatggacgaacctggtgcaatgtgccttgatgcatcgacatgtgtggaa |
200 |
Q |
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| T |
13261008 |
cagtggccgttcggttgaacaagttcaaaatttggatgataacaatggtgctatggacgaacctgctgcaatgtgccttgatgcatcgacatgtgtggaa |
13260909 |
T |
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| Q |
201 |
aataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttctagttctgc |
300 |
Q |
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| T |
13260908 |
aataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttcaagttctgc |
13260809 |
T |
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| Q |
301 |
ctactgatcctaatgaagtagagacgagtaatcttgatgt |
340 |
Q |
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| T |
13260808 |
ctattgatcctaatgaagtagagacgagtaatctcgatgt |
13260769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 334
Target Start/End: Complemental strand, 13270043 - 13269819
Alignment:
| Q |
113 |
ggttgaacaagttcaaaatttggatgataataatggtgctatggacgaacctggtgcaatgtgccttgatgcatcgacatgtgtggaaaataccgacgag |
212 |
Q |
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| T |
13270043 |
ggttgaacacgttcccaatttggattataataattgtgttcaagttgaagctgctgcaatgtgctttgatgtgtccacatgtgcgaaaaatactgatgag |
13269944 |
T |
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| Q |
213 |
aacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttctagttctgcctactgatc--- |
309 |
Q |
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| T |
13269943 |
aacaccgatgtgcctgttgaagataatctagatgaggtttgttcgtgtagttttgatgattcagatgggacagcacttcaagttctgcctactgatccaa |
13269844 |
T |
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| Q |
310 |
ctaatgaagtagagacgagtaatct |
334 |
Q |
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| T |
13269843 |
ccaatgaagtagagactagtgatct |
13269819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 13269471 - 13269382
Alignment:
| Q |
199 |
aaaataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccag |
288 |
Q |
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| T |
13269471 |
aaaatactgatgagaacacagatgtggcttttgaagatattctacatgaggttcttttatctaactttgaagattcagatgggacaccag |
13269382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 13259891 - 13259827
Alignment:
| Q |
82 |
atgtttcttccaaggaatccagtggccattcggttgaacaagttcaaaatttggatgataataat |
146 |
Q |
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| T |
13259891 |
atgtttctccaaaggaatcaagtggctgtttggttgaacaacttcacaaattggatgataataat |
13259827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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