View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8969_low_4 (Length: 713)
Name: NF8969_low_4
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 29006167 - 29005689
Alignment:
| Q |
19 |
ctgacccttgtctttggattcattatttattttttatgtcggggccactaggaatcagagttacatttgtttgctttatgtgacaacttctcattcttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29006167 |
ctgacccttgtctttggattcattatttattttttatgtcggggccactaggaatcagagttacatttgtttgctttatgtgacaacttctcattcttag |
29006068 |
T |
|
| Q |
119 |
tttgatatgagatgtatagtatgggtatttggaggtgcctatggttatgctagtaatcnnnnnnnn-ctcattttactcctcattgggaaagtggctcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29006067 |
tttgatatgagatgtatagtatgggtatttggaggtgcctatggttatgctagtaatctttttttttctcattttactcctcattgggaaagtggctcta |
29005968 |
T |
|
| Q |
218 |
tgggaagtgaggaatgagtgtatcttttctaatttggtgcttcatggaagacatgggcacatggtgattttcttagtagcagagacaaaagtagcaagat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29005967 |
tgggaagtgaggaatgagtgtatcttttctaatttggtgcttcatggaagacataggcacatggtgattttcttagtagcagagacaaaagtagcaatat |
29005868 |
T |
|
| Q |
318 |
taggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaactaaacttttcaaattgaaattaaaggcattttgcaggcaagagatggagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29005867 |
taggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaactaaacttttcaaattgaaattaaaggcattttgcaggcaagatatggagg |
29005768 |
T |
|
| Q |
418 |
agggtccatgtatgtggcttcttataaattaaaaactttaacaagctggttctacaaaagttccagcccaggcaacata |
496 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
29005767 |
agggtccatgtatgtggcttcttataaatgaaaatctttaacaagctggttccacaaaagttccagcccagccaacata |
29005689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 552 - 700
Target Start/End: Complemental strand, 29005635 - 29005487
Alignment:
| Q |
552 |
atatttaaaagtgtattttcaggcattttggggaggcttttttaatggctgaccaactttttaattgagactaatnnnnnnnntcaagtgcttataaaat |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29005635 |
atatttaaaagtgtattttcaggcattttggggaggcttttttaatggctgaccaactttttaattgagactaataaaaaaaatcaagtgcttataaaat |
29005536 |
T |
|
| Q |
652 |
aaatgtgacttttgttcaaacaagattgaattgagaaacagcacaggtt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005535 |
aaatgtgacttttgttcaaacaagattgaattgagaaacagcacaggtt |
29005487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University