View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_42 (Length: 340)

Name: NF8969_low_42
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_42
NF8969_low_42
[»] chr7 (22 HSPs)
chr7 (20-327)||(25191037-25191343)
chr7 (20-121)||(26827144-26827245)
chr7 (20-126)||(25472148-25472254)
chr7 (18-126)||(30139205-30139313)
chr7 (36-132)||(47085211-47085307)
chr7 (26-121)||(43664228-43664323)
chr7 (20-126)||(12910528-12910634)
chr7 (20-126)||(37371278-37371384)
chr7 (20-93)||(4035953-4036026)
chr7 (20-121)||(25340955-25341056)
chr7 (20-121)||(31011974-31012075)
chr7 (20-107)||(15000487-15000574)
chr7 (20-107)||(26826986-26827073)
chr7 (20-126)||(32451369-32451476)
chr7 (24-72)||(39857591-39857639)
chr7 (32-72)||(39957936-39957976)
chr7 (23-121)||(30825772-30825870)
chr7 (20-94)||(40233911-40233985)
chr7 (20-121)||(298050-298150)
chr7 (20-92)||(41065374-41065446)
chr7 (20-72)||(45203122-45203174)
chr7 (20-72)||(1999655-1999707)
[»] chr2 (20 HSPs)
chr2 (20-126)||(43341648-43341754)
chr2 (20-107)||(7474147-7474234)
chr2 (20-107)||(17481408-17481495)
chr2 (20-107)||(35457577-35457664)
chr2 (20-121)||(13896598-13896699)
chr2 (20-121)||(14037215-14037316)
chr2 (20-121)||(14380724-14380825)
chr2 (20-121)||(31686298-31686399)
chr2 (20-121)||(40255127-40255228)
chr2 (20-121)||(44282792-44282893)
chr2 (23-121)||(44003263-44003361)
chr2 (20-121)||(31787267-31787368)
chr2 (32-121)||(33597587-33597676)
chr2 (20-107)||(43695648-43695735)
chr2 (20-121)||(32496584-32496688)
chr2 (23-72)||(16765720-16765769)
chr2 (20-121)||(37640140-37640241)
chr2 (35-121)||(19860893-19860979)
chr2 (20-92)||(2442638-2442710)
chr2 (20-74)||(31047817-31047871)
[»] chr8 (19 HSPs)
chr8 (20-126)||(44240724-44240830)
chr8 (20-121)||(194003-194104)
chr8 (20-121)||(8417273-8417374)
chr8 (20-121)||(11071090-11071191)
chr8 (20-121)||(30211201-30211302)
chr8 (20-121)||(34773807-34773908)
chr8 (20-107)||(2026127-2026214)
chr8 (20-107)||(35801708-35801795)
chr8 (23-126)||(45275775-45275878)
chr8 (20-121)||(30982588-30982689)
chr8 (38-121)||(26575859-26575942)
chr8 (20-121)||(629331-629432)
chr8 (20-121)||(23018246-23018347)
chr8 (20-107)||(924644-924731)
chr8 (32-106)||(17073628-17073702)
chr8 (32-106)||(17574568-17574642)
chr8 (20-72)||(721607-721659)
chr8 (20-72)||(882714-882766)
chr8 (20-72)||(36821055-36821105)
[»] chr4 (25 HSPs)
chr4 (20-126)||(48407523-48407629)
chr4 (20-121)||(16202520-16202621)
chr4 (20-121)||(39733430-39733531)
chr4 (20-121)||(45106391-45106492)
chr4 (20-126)||(28963240-28963346)
chr4 (20-126)||(29385428-29385534)
chr4 (20-126)||(53663017-53663123)
chr4 (20-121)||(24035579-24035680)
chr4 (20-121)||(26459597-26459698)
chr4 (20-121)||(39382397-39382498)
chr4 (20-121)||(49128275-49128376)
chr4 (20-92)||(50523285-50523357)
chr4 (20-91)||(38768409-38768480)
chr4 (22-121)||(49724378-49724477)
chr4 (20-121)||(24247164-24247265)
chr4 (23-107)||(53403527-53403611)
chr4 (22-121)||(56561102-56561201)
chr4 (20-72)||(30417831-30417883)
chr4 (20-121)||(22605746-22605845)
chr4 (20-121)||(5937303-5937404)
chr4 (20-109)||(8510755-8510844)
chr4 (20-72)||(51833495-51833547)
chr4 (20-74)||(28912224-28912276)
chr4 (20-107)||(36212833-36212920)
chr4 (24-72)||(29490927-29490975)
[»] chr5 (26 HSPs)
chr5 (20-121)||(31906052-31906153)
chr5 (20-121)||(41741605-41741706)
chr5 (20-121)||(33386861-33386962)
chr5 (20-109)||(41039547-41039636)
chr5 (20-107)||(19357077-19357164)
chr5 (20-121)||(4295545-4295646)
chr5 (35-132)||(25256211-25256308)
chr5 (35-132)||(25320000-25320097)
chr5 (20-121)||(29541799-29541900)
chr5 (20-121)||(33115254-33115355)
chr5 (20-121)||(42663994-42664095)
chr5 (20-107)||(33082344-33082431)
chr5 (20-121)||(3260315-3260416)
chr5 (20-97)||(10900747-10900824)
chr5 (20-121)||(37046177-37046278)
chr5 (20-72)||(27737991-27738043)
chr5 (20-107)||(11017832-11017919)
chr5 (20-107)||(33233059-33233146)
chr5 (20-107)||(14083111-14083198)
chr5 (32-107)||(29367038-29367112)
chr5 (20-121)||(53024-53125)
chr5 (20-72)||(8957934-8957986)
chr5 (20-72)||(39236063-39236115)
chr5 (20-107)||(40980030-40980117)
chr5 (20-121)||(20069069-20069170)
chr5 (20-72)||(7071456-7071510)
[»] chr3 (26 HSPs)
chr3 (20-121)||(48181679-48181780)
chr3 (20-104)||(33329360-33329444)
chr3 (20-126)||(33025162-33025268)
chr3 (20-120)||(11264311-11264411)
chr3 (20-121)||(39252095-39252196)
chr3 (20-107)||(45151226-45151313)
chr3 (20-126)||(30811322-30811428)
chr3 (20-126)||(42275150-42275256)
chr3 (20-121)||(1528125-1528226)
chr3 (20-121)||(38469800-38469901)
chr3 (20-121)||(47140728-47140829)
chr3 (20-107)||(41536389-41536476)
chr3 (20-126)||(28884292-28884398)
chr3 (20-126)||(48253875-48253981)
chr3 (20-121)||(47697309-47697410)
chr3 (20-109)||(50392216-50392305)
chr3 (20-121)||(51124748-51124849)
chr3 (20-121)||(52693159-52693260)
chr3 (20-72)||(5104736-5104788)
chr3 (20-96)||(44610243-44610319)
chr3 (20-107)||(39267058-39267145)
chr3 (20-107)||(42074948-42075035)
chr3 (35-121)||(45488486-45488572)
chr3 (20-126)||(51230318-51230424)
chr3 (20-115)||(40237870-40237965)
chr3 (20-72)||(44329249-44329301)
[»] chr1 (30 HSPs)
chr1 (20-109)||(45179944-45180033)
chr1 (20-132)||(1763317-1763429)
chr1 (20-107)||(24076083-24076170)
chr1 (20-121)||(31099841-31099942)
chr1 (20-121)||(26821954-26822055)
chr1 (20-121)||(26999769-26999870)
chr1 (20-121)||(36495858-36495959)
chr1 (20-121)||(38627836-38627937)
chr1 (20-121)||(47655083-47655184)
chr1 (20-121)||(50978304-50978405)
chr1 (20-121)||(51487853-51487954)
chr1 (20-126)||(7385838-7385944)
chr1 (20-106)||(16342861-16342947)
chr1 (20-126)||(42137071-42137177)
chr1 (20-121)||(5270984-5271085)
chr1 (20-121)||(6706738-6706839)
chr1 (20-121)||(15353777-15353878)
chr1 (20-109)||(44740715-44740804)
chr1 (20-97)||(46408090-46408167)
chr1 (20-126)||(46033112-46033217)
chr1 (20-126)||(50031449-50031555)
chr1 (24-121)||(11829633-11829730)
chr1 (20-121)||(41512763-41512863)
chr1 (20-72)||(4484659-4484711)
chr1 (18-72)||(38843932-38843986)
chr1 (20-121)||(7592684-7592784)
chr1 (20-72)||(50521044-50521096)
chr1 (20-71)||(27576752-27576803)
chr1 (23-107)||(27068432-27068516)
chr1 (20-92)||(11050535-11050607)
[»] scaffold0097 (1 HSPs)
scaffold0097 (20-121)||(32447-32548)
[»] scaffold0068 (1 HSPs)
scaffold0068 (20-121)||(38323-38424)
[»] chr6 (7 HSPs)
chr6 (20-121)||(30019837-30019938)
chr6 (20-72)||(21515132-21515184)
chr6 (20-121)||(27825612-27825712)
chr6 (20-94)||(31745419-31745493)
chr6 (20-121)||(10683782-10683883)
chr6 (20-72)||(921663-921715)
chr6 (20-121)||(20837892-20837993)
[»] scaffold0808 (1 HSPs)
scaffold0808 (20-121)||(4708-4809)
[»] scaffold0184 (1 HSPs)
scaffold0184 (20-98)||(9183-9261)
[»] scaffold0006 (1 HSPs)
scaffold0006 (20-121)||(92159-92258)
[»] scaffold0069 (1 HSPs)
scaffold0069 (18-60)||(17432-17474)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-109)||(301663-301752)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 25191343 - 25191037
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  25191343 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttctctcaaaatcaattatatcaaaatcaattctttcagaatca 25191244  T
Q  120 atactataaaaaggcagaatcaaacaggaaatattggcaaagtgagtttcgcacatgttcttgatgtgtgctggtgagacacgacattaacacaaaaagt 219  Q
    || |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25191243 attctataaaaag-cagaatcaaacagtaaacattggcaaagtgagtttcgcacatgttcttgatgtgtgctggtgagacacgacattaacacaaaaagt 25191145  T
Q  220 aaaagaacaggtccccccgcaaaagtatttattgtacaagggacatgatatccactcaaaaagttaatgagaggtccccccaaatgccaatgctgtgtaa 319  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25191144 ataagaacaggtccccccacaaaagtatttattgtacaagggacatgatatccactcaaaaagttaatgagaggtccccccaaatgccaatgctgtgtaa 25191045  T
Q  320 atctctgc 327  Q
    ||||||||    
T  25191044 atctctgc 25191037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 26827245 - 26827144
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||| |||| ||||||||||||||||| || |||||||||||||||||||||| || |||||| ||||||||| ||| |||||||||| ||| |||||    
T  26827245 aacaactttcaatttgtttaatcaattctgcaatattgtatccaaacataaataaattctctcaaaatcaattatgtcataatcaattttatcataatca 26827146  T
Q  120 at 121  Q
    ||    
T  26827145 at 26827144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 25472254 - 25472148
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || |||||| ||||||| | |||||||||||| | ||| |||||    
T  25472254 aacaacattcagtttgtttaatcaattatgcattattgtatccaaacataaatcaattctctcaaaatcaattctgtcaaaatcaattctatcaaaatca 25472155  T
Q  120 atactat 126  Q
    || ||||    
T  25472154 attctat 25472148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 30139313 - 30139205
Alignment:
Q  18 cgaacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaat 117  Q
    ||||| ||||||| ||||||||||||||| |  |||||||||||||||||||||| | |||||| || ||||||| | ||| |||||||| | |||||||    
T  30139313 cgaacgacattcagtttgtttaatcaattatgaattattgtatccaaacataaatcaattatctgaaaatcaattctgtcagaatcaattctatcagaat 30139214  T
Q  118 caatactat 126  Q
    |||||||||    
T  30139213 caatactat 30139205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 47085307 - 47085211
Alignment:
Q  36 tttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaatactataaaaag 132  Q
    ||||||||||| | ||||||||||||||||||||||| | || |||||| ||||||||| ||| |||||||||| ||||||||||| |||| |||||    
T  47085307 tttaatcaattttgcattattgtatccaaacataaatcaattctctcaaaatcaattatgtcataatcaattttatcagaatcaattctatcaaaag 47085211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 43664323 - 43664228
Alignment:
Q  26 attcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||| | |||| |||  ||||||| |||||||||||||| | |||||||||||    
T  43664323 attcagtttgtttaaacaattctgcattattgtatccaaacataaattaattatgtcataatcaattttatcaaaatcaattatctcagaatcaat 43664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 12910528 - 12910634
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| | || |||||  ||||||| | ||| |||||||| | |||||||||    
T  12910528 aacaacattcagtttgtttaatcaattctgcattattatatccaaacataaatcaattctctcagaatcaattctgtcagaatcaattatatcagaatca 12910627  T
Q  120 atactat 126  Q
    || ||||    
T  12910628 attctat 12910634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 37371278 - 37371384
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||| |||||||   ||| |||||||| | ||| |||||    
T  37371278 aacaacattcactttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattccgtcagaatcaattctatcaaaatca 37371377  T
Q  120 atactat 126  Q
    || ||||    
T  37371378 attctat 37371384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 4035953 - 4036026
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaatta 93  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||    
T  4035953 aacaacatttagtttgtttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcaatta 4036026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 25341056 - 25340955
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  25341056 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 25340957  T
Q  120 at 121  Q
    ||    
T  25340956 at 25340955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 31012075 - 31011974
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  31012075 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 31011976  T
Q  120 at 121  Q
    ||    
T  31011975 at 31011974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 15000487 - 15000574
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||| ||||||| | ||| ||||||||    
T  15000487 aacaacattcagtttgtttaatcaattctgcattattttattcaaacataaatcaattatctcaaaatcaattctgtcagaatcaatt 15000574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 26826986 - 26827073
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||  | || |||||| ||||||| | ||| ||||||||    
T  26826986 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaaccaattctctcaaaatcaattttgtcagaatcaatt 26827073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 32451369 - 32451476
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctc-aagatcaattatatcaaaatcaattttttcagaatc 118  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| | || |||| || ||||||||| | | |||||||| | ||||||||    
T  32451369 aacaacattcattatgtttaatcaattttacattattgtatcgaaacataaatcaattctctcaaaaatcaattatgttataatcaattctatcagaatc 32451468  T
Q  119 aatactat 126  Q
    ||| ||||    
T  32451469 aattctat 32451476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 39857591 - 39857639
Alignment:
Q  24 acattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  39857591 acattcattttgtttaatcgattctacgttattgtatccaaacataaat 39857639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 39957976 - 39957936
Alignment:
Q  32 tttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39957976 tttgtttaatcaattctacattattgtatccaaacataaat 39957936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 30825772 - 30825870
Alignment:
Q  23 aacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    ||||||||  |||||||||||||||| |||||||||||||||||| |||| | || ||| || || |||| | ||| |||||||||| ||| |||||||    
T  30825772 aacattcagattgtttaatcaattctgcattattgtatccaaacagaaatcatttctcttaaaattaattttgtcagaatcaattttatcaaaatcaat 30825870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 40233911 - 40233985
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattat 94  Q
    |||||||||||||  |||||||||||| ||| |||||||||| |||||||||| | || |||||| |||||||||    
T  40233911 aacaacattcattccgtttaatcaattatacgttattgtatctaaacataaatcaattctctcaaaatcaattat 40233985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 298150 - 298050
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||||| |||| |||||||||||||| ||||| |||||||||||||||||| | || ||| || ||||||| | ||| |||||||| | ||| |||||    
T  298150 aacaacatccattctgtttaatcaattccacatttttgtatccaaacataaatcaattctct-aaaatcaattctgtcagaatcaattctatcataatca 298052  T
Q  120 at 121  Q
    ||    
T  298051 at 298050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 41065374 - 41065446
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaatt 92  Q
    ||||||||||||| | ||||||||||||||| |||| |||| ||||||||||| | |||||| || |||||||    
T  41065374 aacaacattcattctctttaatcaattctacgttatcgtattcaaacataaatcaattatcttaaaatcaatt 41065446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 45203122 - 45203174
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| || |||||||||||||| |||||||||||| ||||||||||    
T  45203122 aacaacattcaattggtttaatcaattctgcattattgtatctaaacataaat 45203174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 1999707 - 1999655
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||| ||| | ||||||||||||||||||||||| |  ||||||||||    
T  1999707 aacaacatttattctatttaatcaattctacattattgtgtttaaacataaat 1999655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 43341754 - 43341648
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| ||| |||||||||| |||||||||    
T  43341754 aacaacatttagtttgtttaatcaattctgcattattgtatccaaacataaatcaattatctcaaaatcaattatgtcagaatcaattttatcagaatca 43341655  T
Q  120 atactat 126  Q
    || ||||    
T  43341654 attctat 43341648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 7474147 - 7474234
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||| ||||||| | ||| ||||||||    
T  7474147 aacaacattcattttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattctgtcagaatcaatt 7474234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 17481408 - 17481495
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||| ||||||||| ||| ||||||||    
T  17481408 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattatgtcagaatcaatt 17481495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 35457664 - 35457577
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| | || |||||| ||||||||| ||| ||||||||    
T  35457664 aacaacattcagtttgtttaaacaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattatgtcataatcaatt 35457577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 13896598 - 13896699
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||  || |||| | | | |||||||| | |||||||||    
T  13896598 aacaacattcagtttgtttaatcaattctacattattgtatccaaacataaatcaattctctcagaataaattctgttagaatcaattctatcagaatca 13896697  T
Q  120 at 121  Q
    ||    
T  13896698 at 13896699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 14037215 - 14037316
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||  || |||| | | | |||||||| | |||||||||    
T  14037215 aacaacattcagtttgtttaatcaattctacattattgtatccaaacataaatcaattctctcagaataaattctgttagaatcaattctatcagaatca 14037314  T
Q  120 at 121  Q
    ||    
T  14037315 at 14037316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 14380724 - 14380825
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  14380724 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 14380823  T
Q  120 at 121  Q
    ||    
T  14380824 at 14380825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 31686399 - 31686298
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  31686399 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 31686300  T
Q  120 at 121  Q
    ||    
T  31686299 at 31686298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 40255127 - 40255228
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  40255127 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 40255226  T
Q  120 at 121  Q
    ||    
T  40255227 at 40255228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 44282792 - 44282893
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  44282792 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 44282891  T
Q  120 at 121  Q
    ||    
T  44282892 at 44282893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 44003263 - 44003361
Alignment:
Q  23 aacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    |||||| | ||||||||||||||||| ||||||||||||||||| ||||| | || |||||| ||||||||| | | |||||||| | |||||||||||    
T  44003263 aacatttaatttgtttaatcaattctgcattattgtatccaaacgtaaatcaattctctcaaaatcaattatgttataatcaattctatcagaatcaat 44003361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 31787267 - 31787368
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| |  ||||||||||| |||||||||||    
T  31787267 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgccaaaatcaattctttcagaatca 31787366  T
Q  120 at 121  Q
    ||    
T  31787367 at 31787368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 33597676 - 33597587
Alignment:
Q  32 tttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    ||||||||||||||| || |||||||||||||||||||||| | || |||||| ||||||| || || |||||||| | |||||||||||    
T  33597676 tttgtttaatcaattttatattattgtatccaaacataaatcaattctctcaaaatcaattctaccagaatcaattctatcagaatcaat 33597587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 43695648 - 43695735
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||| ||| | ||||||||||||||||||||| ||||||||||||||| | || | |||| ||||||||| ||| ||||||||    
T  43695648 aacaacatttattctctttaatcaattctacattattatatccaaacataaatcaattctttcaaaatcaattatgtcagaatcaatt 43695735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 32496688 - 32496584
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagtta---tctcaagatcaattatatcaaaatcaattttttcagaa 116  Q
    ||||||||||| |||| |||||||||| | ||||||||||||||||||||||| | |||   |||||| ||||||| | ||| |||||||| | ||||||    
T  32496688 aacaacattcagtttgcttaatcaattatgcattattgtatccaaacataaatcaattattctctcaaaatcaattctgtcataatcaattctatcagaa 32496589  T
Q  117 tcaat 121  Q
    |||||    
T  32496588 tcaat 32496584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 16765769 - 16765720
Alignment:
Q  23 aacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  16765769 aacattcagtttgtttaatcaattctacattattgtatctaaacataaat 16765720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 37640241 - 37640140
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||| | || | | |  ||||||| ||||| |||||||  | |||||||||    
T  37640241 aacaacgttcattttgtttaatcaattatgcattattgtatccaaacataaatcaattctattacaatcaattctatcagaatcaatactgtcagaatca 37640142  T
Q  120 at 121  Q
    ||    
T  37640141 at 37640140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 19860893 - 19860979
Alignment:
Q  35 gtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    |||||||||||| | ||||||||||||||||| ||||| | || |||||| ||||||||| ||||||||| || | ||| |||||||    
T  19860893 gtttaatcaattttgcattattgtatccaaacgtaaatcaattctctcaaaatcaattatttcaaaatcagttatatcataatcaat 19860979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2442710 - 2442638
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaatt 92  Q
    |||||||||| || ||||||||||||||||  |||| |||||||||||||||| | || |||||| |||||||    
T  2442710 aacaacattctttctgtttaatcaattctatgttatcgtatccaaacataaatcaattctctcaaaatcaatt 2442638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31047871 - 31047817
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataa 74  Q
    ||||||||  ||||||||||||||||| | |||||||||||||||| ||||||||    
T  31047871 aacaacatctattttgtttaatcaattatgcattattgtatccaaatataaataa 31047817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 44240724 - 44240830
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||  ||||||| ||||| |||||||||| |||||||||    
T  44240724 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcagaatcaattctatcagaatcaattttgtcagaatca 44240823  T
Q  120 atactat 126  Q
    || ||||    
T  44240824 attctat 44240830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 194003 - 194104
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  194003 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 194102  T
Q  120 at 121  Q
    ||    
T  194103 at 194104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 8417273 - 8417374
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| | || |||||| ||||||||| ||| ||| |||| | ||| |||||    
T  8417273 aacaacattcaatttgtttaatcaattctgcattattatatccaaacataaatcaattctctcaaaatcaattatgtcagaattaattctctcaaaatca 8417372  T
Q  120 at 121  Q
    ||    
T  8417373 at 8417374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 11071090 - 11071191
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||| |||||||||||||  |||||||||||||||||||||| | || | |||| ||||||||||||| |||||||| |  ||||||||    
T  11071090 aacaacattcaatttatttaatcaattctgtattattgtatccaaacataaatcaattctatcaaaatcaattatatcagaatcaattctgccagaatca 11071189  T
Q  120 at 121  Q
    ||    
T  11071190 at 11071191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 30211201 - 30211302
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  30211201 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 30211300  T
Q  120 at 121  Q
    ||    
T  30211301 at 30211302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 34773908 - 34773807
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  34773908 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 34773809  T
Q  120 at 121  Q
    ||    
T  34773808 at 34773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 2026127 - 2026214
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||||| | || |||||| ||||||| | ||| ||||||||    
T  2026127 aacaacattcagtttgtttaatcaattctgcattattgtatcaaaacataaatcaattctctcaaaatcaattctttcagaatcaatt 2026214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 35801795 - 35801708
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | || | |||  ||||||| ||||| ||||||||    
T  35801795 aacaacattcattttgtttaatcaattctgcattattgtattcaaacataaatcaattctgtcacaatcaattctatcataatcaatt 35801708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 45275878 - 45275775
Alignment:
Q  23 aacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaata 122  Q
    |||||||| ||||||||||||||| | |||| |||||||||||||||||| | || |||||| ||||||| | ||| |||||||| | |||||||||||     
T  45275878 aacattcagtttgtttaatcaattttgcattgttgtatccaaacataaatcaattctctcaaaatcaattctgtcagaatcaattctatcagaatcaatt 45275779  T
Q  123 ctat 126  Q
    ||||    
T  45275778 ctat 45275775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 30982689 - 30982588
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| |||||||| |||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  30982689 aacaacaatcattctgtttaattaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 30982590  T
Q  120 at 121  Q
    ||    
T  30982589 at 30982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 26575859 - 26575942
Alignment:
Q  38 taatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    |||||||||||| |||||||||||||||||||||| | || |||||| ||||||| ||||| |||||||| | ||| |||||||    
T  26575859 taatcaattctatattattgtatccaaacataaatcaattctctcaaaatcaattctatcagaatcaattctatcaaaatcaat 26575942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 629331 - 629432
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| || ||||||||||| | || | |||  ||||||| | ||| |||||||| |||||||||||    
T  629331 aacaacaatcattctgtttaatcaattctgcattattgcattcaaacataaatcaattctgtcagaatcaattctgtcataatcaattctttcagaatca 629430  T
Q  120 at 121  Q
    ||    
T  629431 at 629432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 23018347 - 23018246
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||| | ||||||||||||| ||||||||||||||||||| ||||| | |||||| |  ||||||| ||| | |||||||| | |||||||||    
T  23018347 aacaacactcaatgtgtttaatcaattttacattattgtatccaaacgtaaatcaattatcttacaatcaattctattagaatcaattctatcagaatca 23018248  T
Q  120 at 121  Q
    ||    
T  23018247 at 23018246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 924644 - 924731
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||| ||||| ||||||||||||||| | |||||||| |||||||||||||| | ||||||||| |||| ||   ||||||||||||    
T  924644 aacaatattcagtttgtttaatcaattatgcattattgcatccaaacataaatcaattatctcaaaatcatttcggtcaaaatcaatt 924731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 17073702 - 17073628
Alignment:
Q  32 tttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaat 106  Q
    ||||||||||||||||| ||||||||||||||||||||||  | || | |||| ||||||| ||||| |||||||    
T  17073702 tttgtttaatcaattctgcattattgtatccaaacataaaccaattctttcaaaatcaattctatcagaatcaat 17073628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 17574568 - 17574642
Alignment:
Q  32 tttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaat 106  Q
    ||||||||||||||||| ||||||||||||||||||||||  | || | |||| ||||||| ||||| |||||||    
T  17574568 tttgtttaatcaattctgcattattgtatccaaacataaaccaattctttcaaaatcaattctatcagaatcaat 17574642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 721607 - 721659
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||    
T  721607 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaat 721659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 882714 - 882766
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||    
T  882714 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaat 882766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 36821105 - 36821055
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| |||||   ||||||||| |||||||||||||||||||||||    
T  36821105 aacaacattcagtttgtc--atcaattctgcattattgtatccaaacataaat 36821055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 48407523 - 48407629
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || | |||  ||||||| |||||||||||||| | |||||||||    
T  48407523 aacaacattcattttgtttaatcaattctgcattattgtatccaaacataaatcaattctgtcacaatcaattctatcaaaatcaattctgtcagaatca 48407622  T
Q  120 atactat 126  Q
    || ||||    
T  48407623 attctat 48407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 16202621 - 16202520
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||| | || |||||| ||||||| |||||||||||||| | ||| |||||    
T  16202621 aacaacattcattatatttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcaattttatcaaaatcaattctatcaaaatca 16202522  T
Q  120 at 121  Q
    ||    
T  16202521 at 16202520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 39733430 - 39733531
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||| | ||| |||||| ||| |||||||||    
T  39733430 aacaacattcagtttgtttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcaattctgtcataatcaagtttatcagaatca 39733529  T
Q  120 at 121  Q
    ||    
T  39733530 at 39733531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 45106391 - 45106492
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || |||||| ||||||||| ||| |||||||| | ||| |||||    
T  45106391 aacaacattcagtttgtttaatcaattttgcattattgtatccaaacataaatcaattctctcaaaatcaattatgtcagaatcaattctctcaaaatca 45106490  T
Q  120 at 121  Q
    ||    
T  45106491 at 45106492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 28963346 - 28963240
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | |||||||||||| |||||||||| | || |||||| ||||||| | ||| |||||||| | |||||||||    
T  28963346 aacaacattcagtttgtttaatcaattttgcattattgtatctaaacataaatcaattctctcaaaatcaattctgtcagaatcaattctatcagaatca 28963247  T
Q  120 atactat 126  Q
    || ||||    
T  28963246 attctat 28963240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 29385534 - 29385428
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || | |||| ||||||| | |||||||||||| | | |||||||    
T  29385534 aacaacattcagtttgtttaatcaattatgcattattgtatccaaacataaatcaattctttcaaaatcaattctgtcaaaatcaattctattagaatca 29385435  T
Q  120 atactat 126  Q
    || ||||    
T  29385434 attctat 29385428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 53663123 - 53663017
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || | | || ||||||||| ||| |||||||| | |||||||||    
T  53663123 aacaacattcagtttgtttaatcaattttgcattattgtatccaaacataaatcaattcttttaaaatcaattatgtcataatcaattctatcagaatca 53663024  T
Q  120 atactat 126  Q
    || ||||    
T  53663023 attctat 53663017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 24035680 - 24035579
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  24035680 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 24035581  T
Q  120 at 121  Q
    ||    
T  24035580 at 24035579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 26459597 - 26459698
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || ||| || ||||||||| ||| |||||||| | | |||||||    
T  26459597 aacaacattcaatttgtttaatcaattttgcattattgtatccaaacataaatcaattctcttaaaatcaattatgtcagaatcaattctattagaatca 26459696  T
Q  120 at 121  Q
    ||    
T  26459697 at 26459698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 39382498 - 39382397
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  39382498 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 39382399  T
Q  120 at 121  Q
    ||    
T  39382398 at 39382397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 49128275 - 49128376
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  49128275 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 49128374  T
Q  120 at 121  Q
    ||    
T  49128375 at 49128376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 50523357 - 50523285
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaatt 92  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||| |||||||    
T  50523357 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaatt 50523285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 38768409 - 38768480
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaat 91  Q
    ||||||||||||||||||||||||||||| || ||||||||||| |||||||| | ||||||||| ||||||    
T  38768409 aacaacattcattttgtttaatcaattctgcagtattgtatccagacataaatcaattatctcaaaatcaat 38768480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 49724378 - 49724477
Alignment:
Q  22 caacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||  | || |||||| ||||||||| ||| |||||||| | ||| |||||||    
T  49724378 caacattcagtttgtttaatcaattatgcattattgtatccaaacataaaccaattctctcaaaatcaattatgtcataatcaattctatcataatcaat 49724477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 24247164 - 24247265
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| |  ||||||||||| |||||||||||    
T  24247164 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgacaaaatcaattctttcagaatca 24247263  T
Q  120 at 121  Q
    ||    
T  24247264 at 24247265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 53403611 - 53403527
Alignment:
Q  23 aacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||  | || |||||| ||||||||| ||| ||||||||    
T  53403611 aacattcagtttgtttaatcaattatgcattattgtatccaaacataaaccaattctctcaaaatcaattatgtcataatcaatt 53403527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 56561102 - 56561201
Alignment:
Q  22 caacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    ||||||||| ||||||||||||||||| | ||||||||||||||||||||| | || |||||  ||||||| | | | |||||||| | |||||||||||    
T  56561102 caacattcagtttgtttaatcaattctgcgttattgtatccaaacataaatcaattctctcataatcaattctgtgagaatcaattctatcagaatcaat 56561201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 30417883 - 30417831
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  30417883 aacaacattcagtttgtttaatcaattctgcattattgtatctaaacataaat 30417831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 22605845 - 22605746
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||||||||||  ||||||||||| || ||||||||||||||||||||||| | || |||||| ||||||| | ||  |||||||| | ||| |||||    
T  22605845 aacaacattcatt--gtttaatcaatactgcattattgtatccaaacataaatcaattctctcaaaatcaattctgtcccaatcaattctatcaaaatca 22605748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 5937404 - 5937303
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| | || ||| || ||||||  | ||| |||||||| | ||| |||||    
T  5937404 aacaacattcagtttgtttaatcaattctgcattattgtattcaaatataaatcaattctctaaaaatcaatgctgtcataatcaattctatcaaaatca 5937305  T
Q  120 at 121  Q
    ||    
T  5937304 at 5937303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 8510755 - 8510844
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatttt 109  Q
    ||||||||| ||| | ||| ||||||| | ||||||||||||||||||||||| | || | |||  |||||||||||||||| |||||||    
T  8510755 aacaacatttattctattttatcaattatgcattattgtatccaaacataaatcaattctatcagaatcaattatatcaaaaccaatttt 8510844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 51833547 - 51833495
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||||| ||||||||||||||||| |||| |||| |||||||||||    
T  51833547 aacaacattcattctgtttaatcaattctacgttatcgtattcaaacataaat 51833495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 28912224 - 28912276
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataa 74  Q
    ||||||||||||| |  ||||||||||| ||||||||||||||||||||||||||    
T  28912224 aacaacattcattct--ttaatcaattccacattattgtatccaaacataaataa 28912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 36212833 - 36212920
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    |||||||| |||||| ||||||||| | | |||||||| |||||||||||||| | || | | ||  ||||||||| |||||||||||    
T  36212833 aacaacatacattttatttaatcaaatatgcattattgcatccaaacataaatcaattttgttaaactcaattataacaaaatcaatt 36212920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 29490975 - 29490927
Alignment:
Q  24 acattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||||||||||||||| |  ||||||  ||||||||||||||    
T  29490975 acattcattttgtttaatcaattatgtattattagatccaaacataaat 29490927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 31906052 - 31906153
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||| ||||||||| ||| |||||||| | |||||||||    
T  31906052 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattatgtcataatcaattctatcagaatca 31906151  T
Q  120 at 121  Q
    ||    
T  31906152 at 31906153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 41741706 - 41741605
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || | |||| ||||||| |||||||||||||| | |||||||||    
T  41741706 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaattaattctttcaaaatcaattctatcaaaatcaattctatcagaatca 41741607  T
Q  120 at 121  Q
    ||    
T  41741606 at 41741605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 33386962 - 33386861
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||  | || |||||| ||||||||||||| |||||||| | ||| |||||    
T  33386962 aacaacattcattctatttaatcaattctacattattgtatccaaacataaaccaattctctcaaaatcaattatatcagaatcaattctatcaaaatca 33386863  T
Q  120 at 121  Q
    ||    
T  33386862 at 33386861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 41039636 - 41039547
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatttt 109  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||| | ||| ||||||||||    
T  41039636 aacaacattcatttcgtttaatcaattctgcattattgtatccaaacataaatcagttctctcaaaatcaattctgtcacaatcaatttt 41039547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 19357077 - 19357164
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||| |||  ||||||| ||| ||||||||||    
T  19357077 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattatgtcagaatcaattctattaaaatcaatt 19357164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4295545 - 4295646
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| || |||||||||| ||||||||||| | || |||||| ||||||||| ||| |||||||| | ||| |||||    
T  4295545 aacaacattcaatttgtttaatcaattttaaattattgtattcaaacataaatcaattctctcaaaatcaattatgtcagaatcaattctatcaaaatca 4295644  T
Q  120 at 121  Q
    ||    
T  4295645 at 4295646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 25256308 - 25256211
Alignment:
Q  35 gtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaatactataaaaag 132  Q
    |||||||||||||||||||||||||||||||||||||| | || |||||| |||| |||| ||| |||||||| ||| | ||||||| |||| |||||    
T  25256308 gtttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcatttatgtcagaatcaattcttttaaaatcaattctatcaaaag 25256211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 25320097 - 25320000
Alignment:
Q  35 gtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaatactataaaaag 132  Q
    |||||||||||||||||||||||||||||||||||||| | || |||||| |||| |||| ||| |||||||| ||| | ||||||| |||| |||||    
T  25320097 gtttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcatttatgtcagaatcaattcttttaaaatcaattctatcaaaag 25320000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 29541900 - 29541799
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  29541900 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 29541801  T
Q  120 at 121  Q
    ||    
T  29541800 at 29541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 33115254 - 33115355
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| | || | |||| ||||||| | ||| |||||||| | |||||||||    
T  33115254 aacaacaatcattctgtttaatcaattctgcattattgtatccaaacataaatcaattctgtcaaaatcaattctttcagaatcaattctgtcagaatca 33115353  T
Q  120 at 121  Q
    ||    
T  33115354 at 33115355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 42663994 - 42664095
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  42663994 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 42664093  T
Q  120 at 121  Q
    ||    
T  42664094 at 42664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 33082431 - 33082344
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    |||||||| |||| | ||||||||||||||||||||||||| ||||||||||| | || |||||| ||||||| ||||| ||||||||    
T  33082431 aacaacatccattctatttaatcaattctacattattgtattcaaacataaatcaattctctcaaaatcaattctatcagaatcaatt 33082344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 3260416 - 3260315
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| |||||||||||||||  ||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  3260416 aacaacaatcattctgtttaatcaattctgtattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 3260317  T
Q  120 at 121  Q
    ||    
T  3260316 at 3260315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 10900747 - 10900824
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatc 97  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || |||||| ||||||| ||||    
T  10900747 aacaacattcagtttgtttaatcaattatgcattattgtatccaaacataaatcaattctctcaaaatcaattctatc 10900824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 37046177 - 37046278
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| | || ||| || ||||||| | ||| |||||||| |  ||||||||    
T  37046177 aacaacattcagtttgtttaatcaattctgcattattgtattcaaacataaatcaattctcttaaaatcaattctgtcagaatcaattctaacagaatca 37046276  T
Q  120 at 121  Q
    ||    
T  37046277 at 37046278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 27738043 - 27737991
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  27738043 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaat 27737991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 11017919 - 11017832
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||| | || | |||| ||||||||| ||| ||||||||    
T  11017919 aacaacattcagtttgtctaatcaattctgcattattatatccaaacataaatcaattctatcaaaatcaattatgtcagaatcaatt 11017832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 33233059 - 33233146
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | || |||||  ||||||| | ||| ||||||||    
T  33233059 aacaacattcagtttgtttaatcgattctgcattattgtatccaaacataaatcaattctctcataatcaattctgtcagaatcaatt 33233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 14083111 - 14083198
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||| ||||||| | ||| ||||||||    
T  14083111 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcaaaatcaattctttcagaatcaatt 14083198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 29367112 - 29367038
Alignment:
Q  32 tttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||| | || |||||| ||||||||| | | ||||||||    
T  29367112 tttgtttaatcaaatctacattattgtatccaaacataaatcaattctctcaa-atcaattatgttataatcaatt 29367038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 53125 - 53024
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| |||||||| |||| | | ||| || |||||||||||||||| | |||||| || ||||||||| ||| |||||||| | | |||||||    
T  53125 aacaacattcaatttgtttattcaactgtgcatcatcgtatccaaacataaatcaattatcttaaaatcaattatgtcagaatcaattctattagaatca 53026  T
Q  120 at 121  Q
    ||    
T  53025 at 53024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 8957986 - 8957934
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||    
T  8957986 aacaacattcagtttgtttaatcaattctgcattattgtatctaaatataaat 8957934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 39236115 - 39236063
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  39236115 aacaacattcagtttgtttaatcaattctgcattattatattcaaacataaat 39236063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 40980030 - 40980117
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||| | ||||||||||||||| | |||||||||||||| |||||| | | || |||||| ||||||| ||| | ||||||||    
T  40980030 aacaacatttaatttgtttaatcaattttgcattattgtatccatacataattcaattctctcaaaatcaattttattagaatcaatt 40980117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 20069170 - 20069069
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||||||||   ||||||||||||| | ||||||||||||||||  ||||| | |||||| || ||||||||| | | |||||||| | ||| |||||    
T  20069170 aacaacattcaacgtgtttaatcaattttgcattattgtatccaaatgtaaatcaattatcttaaaatcaattatgttagaatcaattctgtcataatca 20069071  T
Q  120 at 121  Q
    ||    
T  20069070 at 20069069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 7071510 - 7071456
Alignment:
Q  20 aacaacattcattttgtttaatcaattctac--attattgtatccaaacataaat 72  Q
    ||||||||||| ||||||||||||||| | |  ||||||||||||||||||||||    
T  7071510 aacaacattcagtttgtttaatcaattatgcgcattattgtatccaaacataaat 7071456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 48181679 - 48181780
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||| ||||| |||||||| | ||| |||||    
T  48181679 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattatctcaaaatcaattctatcagaatcaattatgtcaaaatca 48181778  T
Q  120 at 121  Q
    ||    
T  48181779 at 48181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 33329444 - 33329360
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatca 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||| ||||    
T  33329444 aacaacatccattttgtttaatcaattctacattattgtatccaaacataaatcaattatgtcaaaatcaattatatcaatatca 33329360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 33025268 - 33025162
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||| ||||||| | ||| |||||||| | |||||||||    
T  33025268 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattctgtcagaatcaattatatcagaatca 33025169  T
Q  120 atactat 126  Q
    || ||||    
T  33025168 atcctat 33025162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 11264311 - 11264411
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | || |||||| ||||||| | ||| |||||||| | |||||||||    
T  11264311 aacaacattcattttgtttaatcaattctgcatttttgtatccaaacataaattaattctctcaaaatcaattctgtcacaatcaattctatcagaatca 11264410  T
Q  120 a 120  Q
    |    
T  11264411 a 11264411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 39252095 - 39252196
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| |||||| | ||| ||||| ||||||| ||||| |||||||| | | |||||||    
T  39252095 aacaacattcagtttgtttaatcaattctgcattattgtatccaaatataaatcaattaactcaaaatcaattctatcagaatcaattatattagaatca 39252194  T
Q  120 at 121  Q
    ||    
T  39252195 at 39252196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 45151226 - 45151313
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || || ||| ||||||| | ||| ||||||||    
T  45151226 aacaacatttattttgtttaatcaattctacattattgtatccaaacataaatcaattctcccaaaatcaattttgtcacaatcaatt 45151313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 30811322 - 30811428
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||||| | || |||||| ||||||| | ||| |||||||| | ||| |||||    
T  30811322 aacaacattcagtttgtttaatcaattctgaattattgtatccaaacataaatcaattctctcaaaatcaattctgtcagaatcaattatatcataatca 30811421  T
Q  120 atactat 126  Q
    || ||||    
T  30811422 attctat 30811428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 42275150 - 42275256
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||  | || |||||| ||||||||| ||| |||||| | | ||| |||||    
T  42275150 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaaccaattctctcaaaatcaattatgtcataatcaactctatcaaaatca 42275249  T
Q  120 atactat 126  Q
    || ||||    
T  42275250 attctat 42275256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 1528125 - 1528226
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  1528125 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 1528224  T
Q  120 at 121  Q
    ||    
T  1528225 at 1528226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 38469800 - 38469901
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  38469800 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 38469899  T
Q  120 at 121  Q
    ||    
T  38469900 at 38469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 47140829 - 47140728
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  47140829 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 47140730  T
Q  120 at 121  Q
    ||    
T  47140729 at 47140728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 41536389 - 41536476
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||| | || ||||||||||||||||||||||||||| ||||| |||| | ||||||||| ||||||||| ||| ||||||||    
T  41536389 aacaacatttagttcgtttaatcaattctacattattgtatctaaacaaaaatcaattatctcaaaatcaattatgtcataatcaatt 41536476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 28884292 - 28884398
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||| | || | | || ||||||||| ||| |||||||| |  ||||||||    
T  28884292 aacaacattcattctctttaatcaattatacattattgtatccaaacataaattaattcttttaaaatcaattatgtcagaatcaattctaccagaatca 28884391  T
Q  120 atactat 126  Q
    || ||||    
T  28884392 attctat 28884398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 48253981 - 48253875
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | |||||||||||| |||||||||| | || |||||| ||||||| | ||| |||||||| | ||| |||||    
T  48253981 aacaacattcagtttgtttaatcaattttgcattattgtatctaaacataaatcaattctctcaaaatcaattctgtcagaatcaattctatcaaaatca 48253882  T
Q  120 atactat 126  Q
    || ||||    
T  48253881 attctat 48253875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 47697309 - 47697410
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| |  ||||||||||| |||||||||||    
T  47697309 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgccaaaatcaattctttcagaatca 47697408  T
Q  120 at 121  Q
    ||    
T  47697409 at 47697410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 50392305 - 50392216
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatttt 109  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | || | |||| ||||||| | ||| ||| ||||||    
T  50392305 aacaatattcaatttgtttaatcaattctacattattgtatccaaacataaatcaattctatcaaaatcaattctgtcagaattaatttt 50392216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 51124849 - 51124748
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | ||| |||||||| |||||||||||    
T  51124849 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcagaatcaattctttcagaatca 51124750  T
Q  120 at 121  Q
    ||    
T  51124749 at 51124748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 52693159 - 52693260
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| |||||||||||||||  ||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  52693159 aacaacaatcattctgtttaatcaattctgtattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 52693258  T
Q  120 at 121  Q
    ||    
T  52693259 at 52693260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 5104788 - 5104736
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5104788 aacaacattcattttgtttaatcaaatctacattattatatccaaacataaat 5104736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 44610319 - 44610243
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatat 96  Q
    |||||||| ||||  |||||||||||| |||||||||||||||||||||||||   ||||||||| |||||||||||    
T  44610319 aacaacatccattccgtttaatcaattttacattattgtatccaaacataaattcattatctcaaaatcaattatat 44610243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 39267145 - 39267058
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||| | ||||||||||||||| |||| |||||||||||||||||||| | || |||||| |||||||| || | ||||||||    
T  39267145 aacaacatttagtttgtttaatcaattatacactattgtatccaaacataaatcaattctctcaaaatcaattacattagaatcaatt 39267058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 42074948 - 42075035
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||| | || |||||||||||||||||||| | || |||||| ||||||| | ||| ||||||||    
T  42074948 aacaacattcagtttgtttaatcaattatgcactattgtatccaaacataaatcaattctctcaaaatcaattctgtcagaatcaatt 42075035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 45488572 - 45488486
Alignment:
Q  35 gtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    |||||||||||| | ||||||||||||||||| ||||| | ||||||||| ||||||| | |||||||||||| | ||| |||||||    
T  45488572 gtttaatcaattttgcattattgtatccaaacgtaaatcaattatctcaaaatcaattctttcaaaatcaattctatcataatcaat 45488486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 51230318 - 51230424
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| | || |||||  ||||||| | ||  |||||||| ||||| |||||    
T  51230318 aacaacattcagtttgtttaatcaattttgcattattgtattcaaacataaatcaattctctcagaatcaattctctcggaatcaattctttcaaaatca 51230417  T
Q  120 atactat 126  Q
    || ||||    
T  51230418 attctat 51230424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 40237870 - 40237965
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcaga 115  Q
    ||||||||||||  |  |||||||||||||| ||||||||| ||||||||||| | || |||||| |||||||||    ||||||||||| |||||    
T  40237870 aacaacattcatcctaattaatcaattctacgttattgtattcaaacataaatcaattctctcaaaatcaattatgatgaaatcaattttatcaga 40237965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 44329249 - 44329301
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||||| | ||||||||||| |||||||| |||| |||||||||||    
T  44329249 aacaacattcattctatttaatcaattttacattatcgtatacaaacataaat 44329301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 45179944 - 45180033
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatttt 109  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||| ||||||||||||||    
T  45179944 aacaacattcattccgtttaatcaattctacattattttatccaaacataaatgaattatctcaaaatcaattatgtcaaaatcaatttt 45180033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 1763317 - 1763429
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||||| ||||  | |||||||||||||||||||||||||||||||||||| | || |||||| ||||||| ||||| |||||||||||| |||||||    
T  1763317 aacaacatccattccgcttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcaattttatcagaatcaatttttttagaatca 1763416  T
Q  120 atactataaaaag 132  Q
    || |||| |||||    
T  1763417 attctatcaaaag 1763429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 24076083 - 24076170
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||| | ||| ||||||||    
T  24076083 aacaacattcagtttgtttaatcaattctacattattgtatccaaacataaatcaattctctcaaaatcaattctgtcagaatcaatt 24076170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 31099942 - 31099841
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||||||||| | || | |||| ||||||||| ||| |||||||| | |||||||||    
T  31099942 aacaacattcattctctttaatcaactctacattattgtatccaaacataaatcaattctttcaaaatcaattatgtcagaatcaattctatcagaatca 31099843  T
Q  120 at 121  Q
    ||    
T  31099842 at 31099841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 26821954 - 26822055
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  26821954 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 26822053  T
Q  120 at 121  Q
    ||    
T  26822054 at 26822055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 26999870 - 26999769
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  26999870 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 26999771  T
Q  120 at 121  Q
    ||    
T  26999770 at 26999769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 36495959 - 36495858
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  36495959 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 36495860  T
Q  120 at 121  Q
    ||    
T  36495859 at 36495858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 38627836 - 38627937
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  38627836 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 38627935  T
Q  120 at 121  Q
    ||    
T  38627936 at 38627937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 47655184 - 47655083
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || ||| || ||||||| | | | |||||||| | |||||||||    
T  47655184 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctaaaaatcaattctgtgagaatcaattctatcagaatca 47655085  T
Q  120 at 121  Q
    ||    
T  47655084 at 47655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 50978405 - 50978304
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  50978405 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 50978306  T
Q  120 at 121  Q
    ||    
T  50978305 at 50978304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 51487954 - 51487853
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  51487954 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 51487855  T
Q  120 at 121  Q
    ||    
T  51487854 at 51487853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 7385838 - 7385944
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| |||||| | || |||||| || |||| | ||| |||||||| |  ||||||||    
T  7385838 aacaacattcagtttgtttaatcaattctgcattattgtatccaaaaataaatcaattctctcaaaattaattctgtcagaatcaattctaacagaatca 7385937  T
Q  120 atactat 126  Q
    || ||||    
T  7385938 attctat 7385944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 16342947 - 16342861
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaat 106  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || | |||  ||||||| | |||||||||||    
T  16342947 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctgtcagaatcaattttttcaaaatcaat 16342861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 42137177 - 42137071
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| | ||||||||||||||| ||||||||||  ||||||||||| | || |||||| ||||||| | |||||||||||| | | |||||||    
T  42137177 aacaacattcaatctgtttaatcaattctgcattattgtacacaaacataaatcaattctctcaaaatcaattttgtcaaaatcaattctataagaatca 42137078  T
Q  120 atactat 126  Q
    || ||||    
T  42137077 attctat 42137071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 5271085 - 5270984
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | ||| |||||||| |||||||||||    
T  5271085 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcagaatcaattctttcagaatca 5270986  T
Q  120 at 121  Q
    ||    
T  5270985 at 5270984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 6706738 - 6706839
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||||||||||| | || | |||| ||||||| | ||| |||||||| | | |||||||    
T  6706738 aacaacatttagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctttcaaaatcaattctgtcagaatcaattctattagaatca 6706837  T
Q  120 at 121  Q
    ||    
T  6706838 at 6706839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 15353777 - 15353878
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| |  ||||||||||| |||||||||||    
T  15353777 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgccaaaatcaattctttcagaatca 15353876  T
Q  120 at 121  Q
    ||    
T  15353877 at 15353878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 44740715 - 44740804
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatttt 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||  | || |||||| || |||| | ||| ||||||||||    
T  44740715 aacaacattcagtttgtttaatcaattctacattattgtatccaaatataaactaattctctcaaaattaattctgtcataatcaatttt 44740804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 46408090 - 46408167
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatc 97  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||  ||||||| ||||    
T  46408090 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcagaatcaattctatc 46408167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 46033217 - 46033112
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||| | |||||| |||| ||||||||||| | || | |||| ||||||| ||||| ||||||||||| ||| ||||    
T  46033217 aacaacattcaatttgtttaatcaattatgcattat-gtattcaaacataaatcaattctttcaaaatcaattctatcagaatcaatttttccaggatca 46033119  T
Q  120 atactat 126  Q
    || ||||    
T  46033118 attctat 46033112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 50031449 - 50031555
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| | ||||||||||||| | |||||||||||| |||||||||  | || |||||| ||||||| | ||| |||||||| | |||||||||    
T  50031449 aacaacattcagtatgtttaatcaattatgcattattgtatcaaaacataaaccaattctctcaaaatcaattctgtcagaatcaattatatcagaatca 50031548  T
Q  120 atactat 126  Q
    || ||||    
T  50031549 attctat 50031555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 11829633 - 11829730
Alignment:
Q  24 acattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatcaat 121  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| | || | |||| ||||||| |  || |||||||| | | |||||||||    
T  11829633 acattcattttgtttaatcaattctatgttattgtatccaaacataaatcaattctttcaaaatcaattctgacagaatcaattctattagaatcaat 11829730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 41512763 - 41512863
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||| ||||||||| ||| |||||||| |||||||||| | || |||||| ||||||| | ||| |||||||| | |||||||||    
T  41512763 aacaacattcagtttgttttatcaattctgcat-attgtatctaaacataaatcaattctctcaaaatcaattctgtcagaatcaattctatcagaatca 41512861  T
Q  120 at 121  Q
    ||    
T  41512862 at 41512863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 4484711 - 4484659
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  4484711 aacaacattcaatttatttaatcaattctgcattattgtatccaaacataaat 4484659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 38843932 - 38843986
Alignment:
Q  18 cgaacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||    
T  38843932 cgaacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaat 38843986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 7592784 - 7592684
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| || ||||||||||| | || | |||  ||||||| | |||||||||||| | |||||||||    
T  7592784 aacaacaatcattctgtttaatcaattctgcattattgcat-caaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctgtcagaatca 7592686  T
Q  120 at 121  Q
    ||    
T  7592685 at 7592684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 50521096 - 50521044
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||||| |||||||| ||||| || |||||||||||||||||||||    
T  50521096 aacaacattcattctgtttaattaattccacgttattgtatccaaacataaat 50521044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 27576752 - 27576803
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaa 71  Q
    ||||||||||||| ||||||||||||||||  |||| |||| ||||||||||    
T  27576752 aacaacattcattctgtttaatcaattctatgttatcgtattcaaacataaa 27576803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 27068432 - 27068516
Alignment:
Q  23 aacattcattttgtttaatcaa-ttctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatt 107  Q
    |||||||||| | ||||||||| ||||| ||||| |||||||||||||||| | ||  ||||| ||||||||| ||| ||||||||    
T  27068432 aacattcattctatttaatcaaattctatattatcgtatccaaacataaatcaattccctcaa-atcaattatgtcagaatcaatt 27068516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 11050607 - 11050535
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaatt 92  Q
    ||||||||| | ||||||||||||||||| |||  |||||| | ||||||||||| || ||| || |||||||    
T  11050607 aacaacatttagtttgtttaatcaattctgcatccttgtattctaacataaataaattctcttaaaatcaatt 11050535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 32548 - 32447
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||| ||||||| | ||| |||||||| | ||| |||||    
T  32548 aacaacattcattttgtttaatcaattatgcattattgtatccaaacataaatcaattatctcaaaatcaattctgtcacaatcaattctatcataatca 32449  T
Q  120 at 121  Q
    ||    
T  32448 at 32447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 38323 - 38424
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | || |||||| ||||||| | |||||||||||| | | |||||||    
T  38323 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaatcaattctctcaaaatcaattctgtcaaaatcaattctattagaatca 38422  T
Q  120 at 121  Q
    ||    
T  38423 at 38424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 30019837 - 30019938
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| | || | |||  ||||||| | |||||||||||| |||||||||||    
T  30019837 aacaacaatcattctgtttaatcaattctgcattattgcatccaaacataaatcaattctgtcagaatcaattctgtcaaaatcaattctttcagaatca 30019936  T
Q  120 at 121  Q
    ||    
T  30019937 at 30019938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 21515184 - 21515132
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  21515184 aacaacattcagtttgtttaatcaattctgcattattgtatccaaacataaat 21515132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 27825612 - 27825712
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||||| | |||||||||||||| ||||| || ||||||||||||| | || |||||| ||||||||| || | ||||||| | |||||||||    
T  27825612 aacaacattcattctatttaatcaattctatattatcgtgtccaaacataaatcaattctctcaaaatcaattatgtc-agatcaattctatcagaatca 27825710  T
Q  120 at 121  Q
    ||    
T  27825711 at 27825712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 31745493 - 31745419
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattat 94  Q
    ||||||||| ||| ||||||||||||| ||| |||| |||||||||||||||||| | ||||||| | |||||||    
T  31745493 aacaacatttattctgtttaatcaattatacgttatcgtatccaaacataaataaatcatctcaaaaccaattat 31745419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 10683782 - 10683883
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| |||||||||| |||||| |||||||| ||| | |||||||| | || |||||| ||||||| | ||| |||||||| | ||| |||||    
T  10683782 aacaacattcagtttgtttaattaattctgcattattgcatcgagacataaatcaattctctcaaaatcaattctgtcagaatcaattatatcaaaatca 10683881  T
Q  120 at 121  Q
    ||    
T  10683882 at 10683883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 921663 - 921715
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaat 72  Q
    |||||||| |||| |||||||||||| |||| |||||||||||||||||||||    
T  921663 aacaacatccattctgtttaatcaatcctactttattgtatccaaacataaat 921715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 20837993 - 20837892
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||||| ||| ||||||||||| | ||||||||||||  ||||||||| | || | |||| ||||||| | | | |||||||| | |||||||||    
T  20837993 aacaacattcaatttatttaatcaattatgcattattgtatcataacataaatcaattttttcaaaatcaattctgtaagaatcaattctatcagaatca 20837894  T
Q  120 at 121  Q
    ||    
T  20837893 at 20837892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4708 - 4809
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||| | || | | || ||||||| | ||| |||||||| | |||||||||    
T  4708 aacaacgttcagcttgtttaatcaattctacattattgtatccaaacataaatcaattctgttaaaatcaattctgtcagaatcaattctatcagaatca 4807  T
Q  120 at 121  Q
    ||    
T  4808 at 4809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 9261 - 9183
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatca 98  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | || | |||| ||||||| |||||    
T  9261 aacaacattcagtttgtttaatcaattatgcattattgtatccaaacataaatcaattctttcaatatcaattctatca 9183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 92159 - 92258
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaattttttcagaatca 119  Q
    ||||||||| | ||||||||||||||||| |||||||||||  |||||||||| |  | |||||| ||||||| | ||| |||||||| | |||||||||    
T  92159 aacaacatttagtttgtttaatcaattctgcattattgtat--aaacataaatcaaatctctcaaaatcaattctgtcataatcaattatatcagaatca 92256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 17432 - 17474
Alignment:
Q  18 cgaacaacattcattttgtttaatcaattctacattattgtat 60  Q
    ||||||||||| | ||||||||||||||||| |||||||||||    
T  17432 cgaacaacatttagtttgtttaatcaattctgcattattgtat 17474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 301752 - 301663
Alignment:
Q  20 aacaacattcattttgtttaatcaattctacattattgtatccaaacataaataagttatctcaagatcaattatatcaaaatcaatttt 109  Q
    |||||||||||   ||||||||||||| | ||||||  ||||||||| ||||| | |||||| || ||||||| | ||| ||||||||||    
T  301752 aacaacattcaacgtgtttaatcaattttgcattataatatccaaacgtaaatcaattatcttaaaatcaattctgtcagaatcaatttt 301663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University