View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8969_low_44 (Length: 326)
Name: NF8969_low_44
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 2491289 - 2491599
Alignment:
| Q |
1 |
aaacatgttccaatggcgaaacacaacaaataacagttagttaag---cttaaaaacacagaaattcccaatgggaattgctcttagcattttatgtctc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491289 |
aaacatgttccaatggcgaaacacaacaaataacagttagttaagaagcttaaaaacacagaaactcccaatgggaattgctcttagcattttatgtctc |
2491388 |
T |
|
| Q |
98 |
tgaactaggtcgcatatccggggttcctttcctaattcaatttgtcttatgtttcttttgcatctgatatgtatgtagaatatattgcttaatgtaagca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491389 |
tgaactaggtcgcatatccggggttcctttcctaattcaatttgtcttatgtttcttttgcatctgatatgtatgtagaatatattgcttaatgtaagca |
2491488 |
T |
|
| Q |
198 |
ccttgtaacacaggttgccgcgagcttcgcagctgagggggctggaatgaatgagttgaggcagtggaatgacctgtatggagaaggcggttcaagaaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2491489 |
ccttgtaacacaggttgccgcgagcttcgcagctgagggggctggaatgaatgagttgaggcagtggaatgacctgtatggagaaggcggttcaagaaag |
2491588 |
T |
|
| Q |
298 |
aaagagcaatt |
308 |
Q |
| |
|
||||||||||| |
|
|
| T |
2491589 |
aaagagcaatt |
2491599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University