View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_45 (Length: 325)
Name: NF8969_low_45
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 32742940 - 32743243
Alignment:
| Q |
15 |
tcatcactttctttccattttcttggtttggaataaatgttaccttatcctaagtaact------gcaacataacagaaactcaaaaaatgaaggtgtca |
108 |
Q |
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| T |
32742940 |
tcatcactttctttccattttcttggtttggaataaatgttaccttatcctaagtaactgcaactgcaacataacagaaactcaaaaaatgaaggtatca |
32743039 |
T |
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| Q |
109 |
tgttacgctccacatgttaaaataccccaagaattaagatttggttcagaagaagctcgtttgtttcttcaaaactgcaacaatttcaaacaactgaaac |
208 |
Q |
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| T |
32743040 |
tgttacgctccacatgttaacataccccaagaattaagatttggttcagaagaagctcgtttgtttcttcaaaactgcaacaatttcaaacaactgaaac |
32743139 |
T |
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| Q |
209 |
aaatccatgctagaataatccgttttcgtcttgctcatgaccagttacttatcagaaagctatgtcaaatttcttcatcatatggtaaaattgattatgc |
308 |
Q |
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| T |
32743140 |
aaatccatgctagaataatccgttttcgtcttactcatgaccaattacttatcagaaagctatgtcaaatttcttcatcatatggtaaaattgattatgc |
32743239 |
T |
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| Q |
309 |
ttct |
312 |
Q |
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|||| |
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| T |
32743240 |
ttct |
32743243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 51425860 - 51425804
Alignment:
| Q |
176 |
ttcaaaactgcaacaatttcaaacaactgaaacaaatccatgctagaataatccgtt |
232 |
Q |
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| T |
51425860 |
ttcaaagctgcaacactttcaagctactgaaacaaatccatgctagaaaaattcgtt |
51425804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 51425794 - 51425738
Alignment:
| Q |
253 |
ttacttatcagaaagctatgtcaaatttcttcatcatatggtaaaattgattatgct |
309 |
Q |
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| T |
51425794 |
ttactaatcataaagctaagtcaaatttcttcttcgtatggtaaaatgcattatgct |
51425738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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