View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_46 (Length: 325)
Name: NF8969_low_46
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_46 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 55939537 - 55939204
Alignment:
| Q |
1 |
aggtgaagagaagtatcaacaccagagtcatagacattattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtct |
100 |
Q |
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| T |
55939537 |
aggtgaagagaagtatcaacaccagagtcatagacattattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtct |
55939438 |
T |
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| Q |
101 |
caacagtatcactactactcgtgctagtgctagtg---------ttgttatcatcttgcatgccctgtgatgttgttggccatagtgaaagagaaacatg |
191 |
Q |
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| T |
55939437 |
caacagtatcactactactcgtgctagtgctagtgctagtgttgttgttatcatcttgcatgccttgtgatgttgttggccatagtgaaagagaaacatg |
55939338 |
T |
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| Q |
192 |
aggtggtgatggtgaccctgatgaattgatgttgatcaattcagggtggaaaaacagccttgtaattggttcgtgactcataccacgactcgaataattc |
291 |
Q |
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| T |
55939337 |
aggtggtgatggtgaccctgatgaattgatgttgatcaattcagggtggaaaaacagccttgtaattggttcgtgactcataccacgactcgaataattc |
55939238 |
T |
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| Q |
292 |
aaatgtttagtttcatgattgccaagcattttta |
325 |
Q |
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| T |
55939237 |
aaatgtttagtttcatgattgccaagcattttta |
55939204 |
T |
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Back To:
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 9587745 - 9587702
Alignment:
| Q |
157 |
tgtgatgttgttggccatagtgaaagagaaacatgaggtggtga |
200 |
Q |
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| T |
9587745 |
tgtgatgttgttggccaaagagaaagagaaacatgaggtggtga |
9587702 |
T |
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