View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_5 (Length: 713)
Name: NF8969_low_5
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 208 - 669
Target Start/End: Complemental strand, 32870504 - 32870045
Alignment:
| Q |
208 |
gaaataaagcatatatattaggaggtaggacaattttttnnnnnnntgagtcgattattatgagaatgagggagtaatatataaactctatatggtggta |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
32870504 |
gaaataaagcatatatattaggaggtaggacaattgtttttacaaatgagtcggttattatgagaaggagggagtaatatataaactctat--ggtggta |
32870407 |
T |
|
| Q |
308 |
tagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataaga |
407 |
Q |
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|| |||||||||||||||||||| |||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
32870406 |
taacacttacccactcaaccaaattaacgtccatgtgagggttagctttatcaatcgctactcgtccagttattaactcaaggagcacgactccataaga |
32870307 |
T |
|
| Q |
408 |
gtaaacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagcttaatatatcata |
507 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32870306 |
gtaaacatcggatttatcagtaagtcgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagcttaatatatcata |
32870207 |
T |
|
| Q |
508 |
aatgatatgttgagaggaagggaataaatttgttcgtacccaaaagtccccttcacttgagtagaaatgggagtactggaatcaggtgcatcctttgcaa |
607 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |
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| T |
32870206 |
aatgatatgttgagaggaagggaataaattttttcatacccgaaagtccccttcacttgagtagaaacgtgagtgctggaatcaggtgaatcctttgcaa |
32870107 |
T |
|
| Q |
608 |
gaccaaaatctgcaacctgtcaacagaaatttgatactaaattaaactaaaattcacaactt |
669 |
Q |
| |
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| T |
32870106 |
gaccaaaatcagcaacctttcaacagaaattcgatactaaattaaactaatattcacaactt |
32870045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 32870746 - 32870523
Alignment:
| Q |
4 |
gctcatcgttggtcgatcatttgctgacagacgcgtgcaagcttcagcgcatgctatcatacgagtcatctcattacggtcaaat---accttaagcctt |
100 |
Q |
| |
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||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||||||||| |||||||||||| |||||||||| |
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| T |
32870746 |
gctcatctttggtcgatcctttgctgactgacgcgtgcaagctgcagcgcatgctaccatatgagtcatctctttacggtcaaattgcttcttaagcctt |
32870647 |
T |
|
| Q |
101 |
gaatcaaccagatgcttattttcttttaaacccctcttgaaaaaaggcctagcctgt----------gatggttgtagttaaaagttagggttatgctag |
190 |
Q |
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| ||||||||||| || ||| |||||||| | | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32870646 |
ggatcaaccagatcattttttccttttaaagcacgcatgaaaaaaggcctagcctgtgatgatgaaagatggttgtagttaaaagttagggttatgctag |
32870547 |
T |
|
| Q |
191 |
ggtatcattcaaaagaggaaataa |
214 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
32870546 |
ggtatcattcaaaagaggaaataa |
32870523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 282 - 503
Target Start/End: Complemental strand, 32903757 - 32903541
Alignment:
| Q |
282 |
taatatataaactctatatggtggtatagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttatt |
381 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||||||| | | | ||| || | | ||||||||| ||||||||||||||||| | |
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| T |
32903757 |
taatatataaactctctatggt-----aacacttacccactcaaccaaactatcatccatgtaagtctgatctttatcaaccggtcgtcgtccagttaat |
32903663 |
T |
|
| Q |
382 |
aactcaaggagcacgactccataagagtaaacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattg |
481 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||| |||| || | |
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| T |
32903662 |
aactcaaggagcatgactccataagagaaaacatctgatttatcggtaagttttccactagcagcatattctggagccagatacctgtagacagcaatag |
32903563 |
T |
|
| Q |
482 |
ataattcatgagcttaatatat |
503 |
Q |
| |
|
||| |||||||||| |||||| |
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|
| T |
32903562 |
atagctcatgagcttgatatat |
32903541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 521 - 669
Target Start/End: Complemental strand, 32903496 - 32903347
Alignment:
| Q |
521 |
gaggaagggaataaatttgtt-cgtacccaaaagtccccttcacttgagtagaaatgggagtactggaatcaggtgcatcctttgcaagaccaaaatctg |
619 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||| ||||| ||||||||| |||| || ||||| ||| |||||||||||||||||| | |
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| T |
32903496 |
gaggaaggaaataaatttgtttcatacccgaaagtccccatcactcgagtagaaacatgagtgttgagatcagaagcaatctttgcaagaccaaaatcag |
32903397 |
T |
|
| Q |
620 |
caacctgtcaacagaaatttgatactaaattaaactaaaattcacaactt |
669 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32903396 |
caacctgtcaacagaaatttgatactaaattaaactaaaattcacaactt |
32903347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 32904012 - 32903929
Alignment:
| Q |
4 |
gctcatcgttggtcgatcatttgctgacagacgcgtgcaagcttcagcgcatgctatcatacgagtcatctcattacggtcaaa |
87 |
Q |
| |
|
||||||| |||||||| |||||||| |||| ||||||||| |||||||||| | ||||||||||||||||||| ||||||| |
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| T |
32904012 |
gctcatctttggtcgacgctttgctgagtgacgtgtgcaagctgcagcgcatgccaccatacgagtcatctcattagggtcaaa |
32903929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 311 - 485
Target Start/End: Complemental strand, 16394745 - 16394571
Alignment:
| Q |
311 |
cacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataagagta |
410 |
Q |
| |
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||||||||||||||||||||||| ||| | ||| || ||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| | |
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| T |
16394745 |
cacttacccactcaaccaaactatcgttcatgtaagtcttatctttatcaatcggctttcgtccagttattaactcaaggagtatgactccataagagaa |
16394646 |
T |
|
| Q |
411 |
aacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataa |
485 |
Q |
| |
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|||||||||||| || |||||||||||| || | ||||||||||| ||| ||||||||||||||| |||||||| |
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| T |
16394645 |
aacatctgatttgtctgtaagttgtccactagagacatattctggagccatatacctgtaagcagcaattgataa |
16394571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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