View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_50 (Length: 319)
Name: NF8969_low_50
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_50 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 119 - 319
Target Start/End: Original strand, 36956008 - 36956208
Alignment:
| Q |
119 |
aatcatatcacatattgatctttttagttaacattgattgtgattgaatattgttttgatttcattataggtgttagagttggggattattgttcactct |
218 |
Q |
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| T |
36956008 |
aatcatatcacatattgatctttttagttaacattgattgtgattgaatattgttttgatttcattataggtgttggagttggggattattgttcactct |
36956107 |
T |
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| Q |
219 |
gttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggccgtttgttgctgcgttgacctttcatcaagtttttgagggcatgggac |
318 |
Q |
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| T |
36956108 |
gttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggccgcttgtagctgcgttgacctttcatcaattttttgagggcatgggac |
36956207 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
36956208 |
t |
36956208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 36939484 - 36939631
Alignment:
| Q |
172 |
ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
271 |
Q |
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| T |
36939484 |
ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggtgcttcagagagtcctaagactataaggcc |
36939583 |
T |
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| Q |
272 |
gtttgttgctgcgttgacctttcatcaagtttttgagggcatgggact |
319 |
Q |
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| T |
36939584 |
attggtcgctgcattgacttttcatcagttctttgaaggcatgggact |
36939631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 36993649 - 36993796
Alignment:
| Q |
172 |
ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
271 |
Q |
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| T |
36993649 |
ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc |
36993748 |
T |
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| Q |
272 |
gtttgttgctgcgttgacctttcatcaagtttttgagggcatgggact |
319 |
Q |
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| T |
36993749 |
attagtggctgcgttgacttttcatcagttctttgaaggcatgggact |
36993796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 37019089 - 37019236
Alignment:
| Q |
172 |
ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
271 |
Q |
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| T |
37019089 |
ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc |
37019188 |
T |
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| Q |
272 |
gtttgttgctgcgttgacctttcatcaagtttttgagggcatgggact |
319 |
Q |
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| T |
37019189 |
attagtggctgcgttgacttttcatcagttctttgaaggcatgggact |
37019236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 36955914 - 36955987
Alignment:
| Q |
22 |
catagggtcatatcgcaggtaatgatattatatataatttttattatgtactaactatgtaagacttttgatta |
95 |
Q |
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| T |
36955914 |
catagggtcatatcgcaggtaatgatattatatataatttttattatgtactaactatgtaagacttttgatta |
36955987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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