View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_53 (Length: 306)
Name: NF8969_low_53
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 39075900 - 39075619
Alignment:
| Q |
17 |
aaaatagacactccatcaccatcagaaagtgtcctaaaaccataatgtgtaggtgtatctctcacataagtattcccacctcttttacaatcatgtatat |
116 |
Q |
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| T |
39075900 |
aaaatagacactccatcaccatcagaaagtgtcctaaaaccataatgtgtaggtgtatctctcacataagtattcccacctcttttacaatcatgtatat |
39075801 |
T |
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| Q |
117 |
taatcccatgaataataatatttgtcacaaattgtacagtaatacaaggtccaccagcaatgtgcacatttgttcctctaccatcaattgttttgaaaga |
216 |
Q |
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| T |
39075800 |
taatcccatgaataataatatttgtcacaaattgtacagtaatacaaggtccaccagcaatgtgcacatttgttcctctaccatcaattgttttgaaaga |
39075701 |
T |
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| Q |
217 |
attcatcattagctcttgtttaagcttaatcaccatgtcacgcttgaagattatccacaatggttcttcttgaataacacca |
298 |
Q |
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| T |
39075700 |
attcatcattagctcttgtttaagcttaataaccatgtcacgcttgaagattatccacaatggttcttcttgaataacacca |
39075619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 88 - 255
Target Start/End: Original strand, 34288590 - 34288757
Alignment:
| Q |
88 |
attcccacctcttttacaatcatgtatattaatcccatgaataataatatttgtcacaaattgtacagtaatacaaggtccaccagcaatgtgcacattt |
187 |
Q |
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| T |
34288590 |
attcccaccttgtttacaatcatgtatatgtatcccatggataataatgtttgtgacatattgtatagtaatgcatggaccaccagcaatgtgcacacta |
34288689 |
T |
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| Q |
188 |
gttcctctaccatcaattgttttgaaagaattcatcattagctcttgtttaagcttaatcaccatgtc |
255 |
Q |
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| T |
34288690 |
gctcctctaccatcaattgttttgaaagagttcattattaactcttcttttaatttgatcaccatgtc |
34288757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 39082210 - 39082144
Alignment:
| Q |
156 |
taatacaaggtccaccagcaatgtgcacatttgttcctctaccatcaattgttttgaaagaattcat |
222 |
Q |
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| T |
39082210 |
taatacatggtccttcagcaatgtgtacatttacacctctaccatcaattgttttgaaagaattcat |
39082144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 43131263 - 43131060
Alignment:
| Q |
88 |
attcccacctcttttacaatcatgtatattaatcccatgaataataatatttgtcacaaattgtacagtaatacaaggtccaccagcaatgtgcacattt |
187 |
Q |
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| T |
43131263 |
attcccaccttgtttacaatcatgtatatgtataccatgtattataacattagtcacatactgaattgtaatacatggaccaccagcaatgtgaacacta |
43131164 |
T |
|
| Q |
188 |
gttcctctaccatcaattgttttgaaagaattcatcattagctcttgtttaagcttaatcaccatgtcacgcttgaagattatccacaatggttcttctt |
287 |
Q |
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| T |
43131163 |
gctcctcttccatcaatggtcttgaatgaattcattataagctcttcttttagctgaatcaccatgtctcttgcaaagattatccataatggttcatctt |
43131064 |
T |
|
| Q |
288 |
gaat |
291 |
Q |
| |
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|||| |
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| T |
43131063 |
gaat |
43131060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 17909888 - 17909796
Alignment:
| Q |
172 |
agcaatgtgcacatttgttcctctaccatcaattgttttgaaagaattcatcattagctcttgtttaagcttaatcaccatgtcacgcttgaa |
264 |
Q |
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|||||| |||||||| | |||||| ||||||||||| |||||| |||| || ||||||||||||| || ||| |||||||| | |||||| |
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| T |
17909888 |
agcaatatgcacattagctcctcttccatcaattgtcttgaaactgttcacaataagctcttgtttaaactgaataaccatgtctctcttgaa |
17909796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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