View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_54 (Length: 292)
Name: NF8969_low_54
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_54 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 15612667 - 15612386
Alignment:
| Q |
9 |
tttggtgttggcgt--tggtattggtggttaatttttatatttgttttttgggtgttccacctatatacggtgtcatttgattgnnnnnnnnngtcttgc |
106 |
Q |
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| T |
15612667 |
tttggtgttggcgtgttggtattggtggttaatttttatatttgttttttgggtgttccgcctatatacggtgtcatttgattgtttttttttgtcttgc |
15612568 |
T |
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| Q |
107 |
cgatctatcaacgtcttattcaaaaacttagttattaataaattttaccattnnnnnnntaaatgatcagaaagaaagagagattaatattgaataaatt |
206 |
Q |
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| T |
15612567 |
cgatctatcaacgtcttatgcaaaaacttggttattaataaattttaccattaaaaaaataaatgat----tagaaagagagattaatattgaataaata |
15612472 |
T |
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| Q |
207 |
tagatccataaaagaatgtgtaatgatgaattttatcttttacatttttagtggtattgaatgatgtaatttatctatctgaatga |
292 |
Q |
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| T |
15612471 |
tagatcgataaaagaataagtaatgataaatttcatcttttacgtttttagtggtgttgaatgatgtactttatcgatctgaatga |
15612386 |
T |
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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 201217 - 201170
Alignment:
| Q |
245 |
tttacatttttagtggtattgaatgatgtaatttatctatctgaatga |
292 |
Q |
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| T |
201217 |
tttacatttttagtggtgttgaatgatgtaatctatcgatttgaatga |
201170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 23851345 - 23851307
Alignment:
| Q |
238 |
tttatcttttacatttttagtggtattgaatgatgtaat |
276 |
Q |
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| T |
23851345 |
tttatcttttacttttttagtggtgttgaatgatgtaat |
23851307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 41712640 - 41712600
Alignment:
| Q |
238 |
tttatcttttacatttttagtggtattgaatgatgtaattt |
278 |
Q |
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| T |
41712640 |
tttatcatttacatttttagtgatgttgaatgatgtaattt |
41712600 |
T |
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