View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_55 (Length: 291)

Name: NF8969_low_55
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_55
NF8969_low_55
[»] chr2 (6 HSPs)
chr2 (7-131)||(34584403-34584527)
chr2 (204-273)||(34578850-34578919)
chr2 (204-273)||(34584599-34584668)
chr2 (7-60)||(34578662-34578715)
chr2 (223-273)||(34571401-34571451)
chr2 (218-273)||(34562599-34562657)
[»] chr8 (2 HSPs)
chr8 (233-271)||(25865825-25865863)
chr8 (233-261)||(44344082-44344110)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 34584403 - 34584527
Alignment:
Q  7 gagaagcagagaaaaataagtaaataatgtgcagagaaaggaaatacacagtaagaaatagaagtggaaaaattagcagatgatgttcacaacagttacg 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34584403 gagaagaagagaaaaataagtaaataatgtgcagagaaaggaaatacacagtaagaaatagaagaggaaaaattagcagatgatgttcacaacagttacg 34584502  T
Q  107 gcagcataaaagaaagataactgat 131  Q
    |||||||||||||||||||||||||    
T  34584503 gcagcataaaagaaagataactgat 34584527  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 34578850 - 34578919
Alignment:
Q  204 cattccaataccagaatagtaactagtcaataaccctaagcacgttcaccacggatacgacgagcaagtt 273  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  34578850 cattccaataccagaatagtaactagtctataaccctaagctcgttcaccacggatacgacgagcaagtt 34578919  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 34584599 - 34584668
Alignment:
Q  204 cattccaataccagaatagtaactagtcaataaccctaagcacgttcaccacggatacgacgagcaagtt 273  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  34584599 cattccaataccagaatagtaactagtctataaccctaagctcgttcaccacggatacgacgagcaagtt 34584668  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 34578662 - 34578715
Alignment:
Q  7 gagaagcagagaaaaataagtaaataatgtgcagagaaaggaaatacacagtaa 60  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  34578662 gagaagaagagaaaaataagtaaataatttgcagagaaaggaaaaacatagtaa 34578715  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 34571401 - 34571451
Alignment:
Q  223 taactagtcaataaccctaagcacgttcaccacggatacgacgagcaagtt 273  Q
    |||||| || ||| |||||||||||||||||||||||||| ||||||||||    
T  34571401 taactaatccatagccctaagcacgttcaccacggatacggcgagcaagtt 34571451  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 34562599 - 34562657
Alignment:
Q  218 aatagtaactagtcaataaccctaagc---acgttcaccacggatacgacgagcaagtt 273  Q
    |||| |||||||||||||||||||| |   |||||||||||||||||| | ||||||||    
T  34562599 aatactaactagtcaataaccctaaccacgacgttcaccacggatacggcaagcaagtt 34562657  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 25865863 - 25865825
Alignment:
Q  233 ataaccctaagcacgttcaccacggatacgacgagcaag 271  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  25865863 ataaccctaagcacgttcaccacgaatacgacgagcaag 25865825  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 44344110 - 44344082
Alignment:
Q  233 ataaccctaagcacgttcaccacggatac 261  Q
    |||||||||||||||||||||||||||||    
T  44344110 ataaccctaagcacgttcaccacggatac 44344082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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