View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_57 (Length: 280)
Name: NF8969_low_57
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_57 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 56279058 - 56278792
Alignment:
| Q |
14 |
attatactgctgaatcattttgcattatggcagagttatgatcagttcagtagttatgttgggtgagatggatgtaggcgttgcagggagctattttaat |
113 |
Q |
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| T |
56279058 |
attatactgctgaatcattttgcattatggcagagttatgatcagttcagtagttatgttgggtgagatggatgtaggcgttgcagggagctattttaat |
56278959 |
T |
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| Q |
114 |
tgtatactggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgactattcttgatgtaaaccaatatcacata |
213 |
Q |
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| T |
56278958 |
tgtatattggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgactattcttgatgtaaaccaatatcacata |
56278859 |
T |
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| Q |
214 |
tatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttct |
280 |
Q |
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| T |
56278858 |
tatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttct |
56278792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 46571641 - 46571485
Alignment:
| Q |
69 |
atgttgggtgagatggatgtaggcgttgcagggagctattttaattgtatac-------------tggaataggccaatgcacagggttggtagaattgg |
155 |
Q |
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| T |
46571641 |
atgttgggtgagatggatgtaggcattgcagggagctattctaattgtatttgggtgctgtcttttggaattggccaatgcacggggctggtagaatttg |
46571542 |
T |
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| Q |
156 |
gtgagatactttagtgtcatgtaatgtgactattcttgatgtaaaccaatatcacat |
212 |
Q |
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| T |
46571541 |
gtgagatactttagtgtcatgtaatgtgactattcttgatgtaaaccaatatcacat |
46571485 |
T |
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