View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_59 (Length: 277)
Name: NF8969_low_59
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_59 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 10337915 - 10337639
Alignment:
| Q |
1 |
ttcggtaacggttaagtgagggtaaagaacatcatcttgagctacaaaacctgttcttctttttattgaacccgagaaaggttgattgttgtaagtggtt |
100 |
Q |
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| T |
10337915 |
ttcggtaacggttaagtgagggtaaagaacatcatcttgagctacaaaacctgttcttctttttattgaacccgagaaaggttgattgttgtaagtggtt |
10337816 |
T |
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| Q |
101 |
tttccggttagtttgccgttgagacggcctccgagtgctgttaggagtgttgttttgccactgcctgatggccctaacatagctagtatttctcctggac |
200 |
Q |
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| T |
10337815 |
tttccggttagtttgccgttgagacggcctccgagtgctgttaggagtgttgttttgccactgcctgatggccctaacatagctagtatttctcctggac |
10337716 |
T |
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| Q |
201 |
acaccacacctgtgattccattcagtatagtcttctctttttggtttactttcactttgtataccaaatcctcaaac |
277 |
Q |
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| T |
10337715 |
acaccacacctgtgattccattcagtatagtcttctctttttggtttactttcactttgtataccaaatcctcaaac |
10337639 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33718432 - 33718367
Alignment:
| Q |
1 |
ttcggtaacggttaagtgagggtaaagaacatcatcttgagctacaaaacctgttcttctttttat |
66 |
Q |
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|||||| || ||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
33718432 |
ttcggttaccgttaagtgagggtaaagaacatcatcttgtgtgacaaaacctgtgtttctttttat |
33718367 |
T |
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