View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_6 (Length: 686)
Name: NF8969_low_6
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 156 - 680
Target Start/End: Original strand, 39542074 - 39542594
Alignment:
| Q |
156 |
ttattcgatcttaactcaaatttcataacaatcacttgatctcaaaaggtgagctagatactatgtatcactgatacttttaatctaagacgtgttcggt |
255 |
Q |
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| T |
39542074 |
ttattcgatcttaactcaaatttcataacaatcacttgatctcaaaaggtgagctagatactatgtatcactgatacttttaatctaagacgtgttcggt |
39542173 |
T |
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| Q |
256 |
gttcgacatgtatcagtgtatgacaacgacatgacagcaacacatgtaattacaattatgtcgtttttaaaagttattaacggtgtcgacgtgttgatgt |
355 |
Q |
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| T |
39542174 |
gttcgacatgtatcagtgtacgacaacgacatgacggcaacacatgtaattacaattatgtcgtttttaaaagttattaacggtgtcaacgtgttaatgt |
39542273 |
T |
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| Q |
356 |
caatgctata--tatattaaaataattagttcataaataatgtttttggagcttattcagttaatgtggtcgaattgactaaacttgtagtccaaaaaat |
453 |
Q |
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| T |
39542274 |
caatgctatatatatattaaaataattagttcataaataatgtttttggagcttattcagttaatgtggtcgaattgactaaacttgtagtccaaaaaat |
39542373 |
T |
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| Q |
454 |
taatgtttgtgaaatactctataaactaagtgggcaccaacaaagtctaccaaagatcttaattacaacgagttttaagaattgaagtttttggagcctt |
553 |
Q |
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| T |
39542374 |
taatgtttgtgaaatactctataaactaagtgggcaccaacaaagtctaccaaagatcttaattacaacgagttttaagaattgaagtttttggagcctt |
39542473 |
T |
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| Q |
554 |
ccaattttctctcttactacggagtatttcatattcttgatgagtcgtatgacctaaaattaaatcacttaagcatattacaattacgaaattgattata |
653 |
Q |
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| T |
39542474 |
ccaattttct------ctacggagtatttcatattcttgatgagtcgtatgacctaaaattaaatcacttaagcatattacaattacgaaattgattata |
39542567 |
T |
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| Q |
654 |
taacgtcagcaattgatgtccatctca |
680 |
Q |
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| T |
39542568 |
taacgtcagcaattggtgtgcatctca |
39542594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 39541562 - 39541704
Alignment:
| Q |
17 |
catagtaagttgagatatggtgaacttgaaaaaatgaatggcagaactaactagaaagctgtctagtgcaggggatcatgtgccagtgccactaaccttg |
116 |
Q |
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| T |
39541562 |
catagtaagttgagatatggtgaacttgaaaaaatgaatggcagaactaactagaaagctgtctagtgcaggggatcatgtgccagtgccactaaccttg |
39541661 |
T |
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| Q |
117 |
tttccccaaagtattgataacaaacaagagcaagttgtattat |
159 |
Q |
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| T |
39541662 |
tttccccaaagtattgataacaaacaagagcaagttgtattat |
39541704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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