View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8969_low_63 (Length: 261)
Name: NF8969_low_63
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 32687244 - 32687489
Alignment:
| Q |
14 |
gacatcactcagtgccctgttaactatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctg |
113 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32687244 |
gacatcactcagtgccctgttaattatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctg |
32687343 |
T |
|
| Q |
114 |
ctccatagcgatgtataaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtcaggtccttgattctgcacatggcagtcaatggatca |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
32687344 |
ctccatagcaatgtataaaggagtacctgcaagctctgaattctgttcaatggaagtaattgccaggtccttgattctgcacatggcagtcaatggatca |
32687443 |
T |
|
| Q |
214 |
acaccatgttccttgtgtaacagaacctcaatattagcaggcctcg |
259 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32687444 |
acaccatgttcctcgtgtaacagaacctcaatattagcaggcctcg |
32687489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 19810957 - 19811202
Alignment:
| Q |
14 |
gacatcactcagtgccctgttaactatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctg |
113 |
Q |
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|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
19810957 |
gacatcactaggtgccttgttaactatattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggaatgagctataatctg |
19811056 |
T |
|
| Q |
114 |
ctccatagcgatgtataaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtcaggtccttgattctgcacatggcagtcaatggatca |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |
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| T |
19811057 |
ctccatagcaatgtataaaggagtacctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatca |
19811156 |
T |
|
| Q |
214 |
acaccatgttccttgtgtaacagaacctcaatattagcaggcctcg |
259 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
19811157 |
acaccatgttcctcatgtaatagaacctcaatattagcaggcctcg |
19811202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 14767487 - 14767661
Alignment:
| Q |
78 |
gtactgagtggcaggcgtggcatgagctataatctgctccatagcgatgtataaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtc |
177 |
Q |
| |
|
||||||||||||| | | || ||||||| ||||| ||||||| | ||||||||||||||||| ||| ||||| |||||||| ||||||| |
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|
| T |
14767487 |
gtactgagtggcaagtatagcctgagctacaatctcctccatatccatgtataaaggagtaccagca---------ttctgctcaatggagttaattgtc |
14767577 |
T |
|
| Q |
178 |
aggtccttgattctgcacatggcagtcaatggatcaacaccatgttccttgtgtaacagaacctcaatattagcaggcctcgac |
261 |
Q |
| |
|
||||| ||||||||||| || ||| |||||||||| ||||||||||| ||||| |||||||||| |||||||||| ||||| |
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|
| T |
14767578 |
aggtcattgattctgcaggtgatagttaatggatcaataccatgttcctcatgtaaaagaacctcaaaattagcaggcatcgac |
14767661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 1199432 - 1199677
Alignment:
| Q |
14 |
gacatcactcagtgccctgttaactatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctg |
113 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1199432 |
gacatcactaggtgccttgttaactatattgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctg |
1199531 |
T |
|
| Q |
114 |
ctccatagcgatgtataaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtcaggtccttgattctgcacatggcagtcaatggatca |
213 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |
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|
| T |
1199532 |
ctccataacaatgtataaaggagtacctgcaagcttcgaattctgttcaatggaagcaattgccagatctttgattctgcacatggcagtcaatggatca |
1199631 |
T |
|
| Q |
214 |
acaccatgttccttgtgtaacagaacctcaatattagcaggcctcg |
259 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
1199632 |
acaccatgttcctcatgtaatagaacctcaatattagcaggcctcg |
1199677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 26942040 - 26941799
Alignment:
| Q |
14 |
gacatcactcagtgccctgttaactatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctg |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |
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|
| T |
26942040 |
gacatcactcagtgccctgt----gatactgcctgacatttctccgcttacgcatcaacgactggtactgagtggtaggcgtggcatgagctataatccg |
26941945 |
T |
|
| Q |
114 |
ctccatagcgatgtataaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtcaggtccttgattctgcacatggcagtcaatggatca |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
26941944 |
ctccatagcaatgtataaaggagtacctgcaagttcttaattctgttcaacggaagtcattgtcaggtcattgattctgcacgtggcagtcaatggatca |
26941845 |
T |
|
| Q |
214 |
acaccatgttccttgtgtaacagaacctcaatattagcaggcctcg |
259 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
26941844 |
acaccatgttcctcatgtaacagaacctcataattagcaggcctcg |
26941799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 25207884 - 25207639
Alignment:
| Q |
14 |
gacatcactcagtgccctgttaactatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataa--tc |
111 |
Q |
| |
|
|||||||||| ||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||| | |
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|
| T |
25207884 |
gacatcactcggtgacttgtgaactatattgcctgacatttctccgcttacgcttcaacgactgatactgagtggccggcgtggcataagctataattta |
25207785 |
T |
|
| Q |
112 |
tgctccatagcgatgtataaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtcaggtccttgattctgcacatggcagtcaatggat |
211 |
Q |
| |
|
||||||| ||| ||||| |||||||||| ||||||||| ||| |||||||||||| | || || ||| |||||||| || |||||||||| ||||| |
|
|
| T |
25207784 |
tgctccagagcaatgtacaaaggagtacttgcaagctcctgattttgttcaatggaattactttccaagtcattgattctacagatggcagtcagtggat |
25207685 |
T |
|
| Q |
212 |
caacaccatgttccttgtgtaacagaacctcaatattagcaggcct |
257 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
25207684 |
caacaccatgttcctcatgtaacagaacctcagaattagcaggcct |
25207639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 18295488 - 18295684
Alignment:
| Q |
30 |
ctgttaactatactgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcgatgtat |
129 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||| | |||||| |||||| |
|
|
| T |
18295488 |
ctgtgaactatattgcctgacctttctccgcttacgcctcaatgacttgtactgagtcgcaggcgtggcctgagctacaatctgtttcatagccatgtat |
18295587 |
T |
|
| Q |
130 |
aaaggagtacctgcaagctctgaattctgttcaatggaagcaattgtcaggtccttgattctgcacatggcagtcaatggatcaacaccatgttcct |
226 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||| ||||| |||| || |||| ||||| ||| ||| |||||| |||||||||||||||| |
|
|
| T |
18295588 |
aaaggagtgtctgcgtactcctgattctgttcaatggaattaattgccagggccctgatcctgcagatgacagacaatggctcaacaccatgttcct |
18295684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 322288 - 322196
Alignment:
| Q |
43 |
tgcctgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcgatgtataaagga |
135 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
322288 |
tgcctgacatttctccgcttacgcctcaatgactggtactgagttgcagacatggcctgagctacaatctgttccatagccatgtataaagga |
322196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 14601161 - 14601262
Alignment:
| Q |
47 |
tgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcgatgtataaaggagtacctgcaag |
146 |
Q |
| |
|
||||||| || ||||||| |||||| || || ||||||||||||||||||| | ||||| ||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
14601161 |
tgacattccttcgcttacacctcaatgaatgatactgagtggcaggcgtggtctcagctacaatatgctccatagcgatgtacaaaggagtgactgcaag |
14601260 |
T |
|
| Q |
147 |
ct |
148 |
Q |
| |
|
|| |
|
|
| T |
14601261 |
ct |
14601262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 16021191 - 16021292
Alignment:
| Q |
47 |
tgacatttctccgcttacgcctcaacgactggtactgagtggcaggcgtggcatgagctataatctgctccatagcgatgtataaaggagtacctgcaag |
146 |
Q |
| |
|
||||||| || ||||||| |||||| || || ||||||||||||||||||| | ||||| ||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16021191 |
tgacattccttcgcttacacctcaatgaatgatactgagtggcaggcgtggtctcagctacaatatgctccatagcgatgtacaaaggagtgactgcaag |
16021290 |
T |
|
| Q |
147 |
ct |
148 |
Q |
| |
|
|| |
|
|
| T |
16021291 |
ct |
16021292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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