View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_65 (Length: 253)
Name: NF8969_low_65
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_65 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 99 - 253
Target Start/End: Original strand, 937096 - 937250
Alignment:
| Q |
99 |
ggctttctcgtatactatgcaacattctatttctgtttgttataagtaggattttctgcagtatgaattgtagcatagtgagtgtatctgacatgaatat |
198 |
Q |
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| T |
937096 |
ggctttctcgtatactatgcaacattctatttctgtttgttataagtaggattttctgcagtatgaattgtagcatagtgagtgtatctgacatgaatat |
937195 |
T |
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| Q |
199 |
atggtatgaaacatcaaactaaacattgcacaattacaagcaattggagattagt |
253 |
Q |
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| T |
937196 |
atggtatgaaacatcaaactaaacattgcacaattacaagcaattggagattagt |
937250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 937053 - 937096
Alignment:
| Q |
16 |
atactcgtgtcgcatctgtgcatcatagatgtttgtcagttcag |
59 |
Q |
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| T |
937053 |
atactcgtgtcgcatctgtgcatcatagatgtttgttagttcag |
937096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 16658313 - 16658372
Alignment:
| Q |
15 |
aatactcgtgtcgcatctgtgcatcatagatgtttgtcagttcagccttggaagacatag |
74 |
Q |
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| T |
16658313 |
aatactcgtgtcgcatctgtgcttcatagatgtttgttagttgagtcttagaagagatag |
16658372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 16659984 - 16660031
Alignment:
| Q |
126 |
tatttctgtttgttataagtaggattttctgcagtatgaattgtagca |
173 |
Q |
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| T |
16659984 |
tatttctgtctgttaaaagtagggttttctgcaatatgaattgtagca |
16660031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 935430 - 935479
Alignment:
| Q |
204 |
atgaaacatcaaactaaacattgcacaattacaagcaattggagattagt |
253 |
Q |
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| T |
935430 |
atgaaacatcaaaattaatattgcacaatcacaagcaattagagattagt |
935479 |
T |
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