View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8969_low_7 (Length: 637)

Name: NF8969_low_7
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8969_low_7
NF8969_low_7
[»] chr3 (9 HSPs)
chr3 (219-616)||(26654520-26654917)
chr3 (11-208)||(26654942-26655139)
chr3 (454-608)||(26648528-26648687)
chr3 (497-608)||(20014777-20014888)
chr3 (513-602)||(20033036-20033125)
chr3 (511-610)||(20032898-20032995)
chr3 (514-608)||(20006865-20006959)
chr3 (497-543)||(17115536-17115582)
chr3 (539-606)||(19952560-19952627)
[»] chr5 (2 HSPs)
chr5 (456-614)||(26353460-26353623)
chr5 (454-608)||(9816465-9816621)
[»] chr1 (1 HSPs)
chr1 (502-616)||(1718553-1718667)
[»] chr7 (2 HSPs)
chr7 (410-453)||(13789574-13789617)
chr7 (410-455)||(8356288-8356333)
[»] chr2 (2 HSPs)
chr2 (394-453)||(27187479-27187537)
chr2 (394-453)||(27837293-27837351)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 219 - 616
Target Start/End: Complemental strand, 26654917 - 26654520
Alignment:
Q  219 ttattcaattgctatatagttttgttattaaaaaataaattaaagaatgaatgtaaatgctctttctaatcgatcaatattgaaattgaattttcaatca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26654917 ttattcaattgctatatagttttgttattaaaaaataaattaaagaatgaatgtaaatgctctttctaatcgataaatattgaaattgaattttcaatca 26654818  T
Q  319 aaggcnnnnnnnattactacaactaagagttcatcaccatttatggagaatatgaaaagcgcgtcactgtcatgatgttaggacttaagccaccacatca 418  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26654817 aaggctttttttattactacaactaagagttcatcaccatttatggagaatatgaaaagcgcgtcactgtcatgatgttaggacttaagccaccacatca 26654718  T
Q  419 agcactttcatttacccgacgtgggactcctaacacatgagtttcatgaagagaattcaaaaacaaatataaagttttaagatgatggtggttgttgatt 518  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26654717 agcactttcatttacccgatgtgggactcctaacacatgagtttcatgaagagaattcaaaaacaaatataaagttttaagatgatggtggttgttgatt 26654618  T
Q  519 ccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtg 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  26654617 ccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaaacgtaacatctcttcttgttgtcttgctagacgtg 26654520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 26655139 - 26654942
Alignment:
Q  11 gatggacatcacatcaatcataggatataatatatgaaaaatgttaacttctacattaagaatgtctacaatggagcccttcttctaaagtgcatcatgc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26655139 gatggacatgacatcaatcataggatataatatatgaaaaatgttaacttctgcattaagaatgtctacaatggagcccttcttctaaagtgcatcatgc 26655040  T
Q  111 taaatagatacccttataatatcaataatttaggttcctatagagatggatgattatataagctctctctatcttatttatgtatgggtcacacatgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26655039 taaatagatacccttataatatcaataatttaggttcctatagagatggatgattatataagctctctctatcttatttatgtatgggtcacacatgc 26654942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 454 - 608
Target Start/End: Complemental strand, 26648687 - 26648528
Alignment:
Q  454 catgagtttcatgaagagaattcaaaaacaaatataaagttttaaga------tgatggtggttgttgattccttagaacactagtgagaagttgcctca 547  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||      ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  26648687 catgagtttcaggaggagaattcaaaaacaaat-taaagttttaagaaaaagatgatggtggttgttgattctttagaacactagtgaggagttgcctca 26648589  T
Q  548 actcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgc 608  Q
    |||||||||| || |||||| ||||||| |||||  | || |||| |||||||||||||||    
T  26648588 actcttcatccctcttctccttcaaatctattaactgaaacatcttttcttgttgtcttgc 26648528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 497 - 608
Target Start/End: Original strand, 20014777 - 20014888
Alignment:
Q  497 aagatgatggtggttgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttc 596  Q
    |||| ||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||| || |||  | ||||||||||||  ||||| ||||| ||    
T  20014777 aagaagatggtggtggttgattctttagaaaactagtgagaagttgtctcaactcttcatccctcttcatcttcaaatccattagccgtaacatctcatc 20014876  T
Q  597 ttgttgtcttgc 608  Q
    ||||||||||||    
T  20014877 ttgttgtcttgc 20014888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 513 - 602
Target Start/End: Original strand, 20033036 - 20033125
Alignment:
Q  513 ttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttg 602  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||| ||| ||| || || |||||||| |||||    
T  20033036 ttgattccttaggacactagtaaggagttgcctcaactcttcatctctcttctccctcaaagccaataaccgcaagatctcttcctgttg 20033125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 511 - 610
Target Start/End: Original strand, 20032898 - 20032995
Alignment:
Q  511 tgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgcta 610  Q
    ||||||||||||||||||||||  || | |||||||||||||||||| || ||||||||||||  || |||||| || |||||||| |||||||||||||    
T  20032898 tgttgattccttagaacactag--aggatttgcctcaactcttcatccctcttctccctcaaagacaataatcgcaagatctcttcctgttgtcttgcta 20032995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 608
Target Start/End: Original strand, 20006865 - 20006959
Alignment:
Q  514 tgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgc 608  Q
    |||||||||||||||||||| || || || |||||||||||||| || ||||||| |||| ||||||    ||| ||||| ||||||||||||||    
T  20006865 tgattccttagaacactagtaaggaggtgtctcaactcttcatccctcttctcccacaaagccattacctctaacatctcctcttgttgtcttgc 20006959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 17115582 - 17115536
Alignment:
Q  497 aagatgatggtggttgttgattccttagaacactagtgagaagttgc 543  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  17115582 aagatgatggttgttgctgattccttagaacactagtgaggagttgc 17115536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 606
Target Start/End: Complemental strand, 19952627 - 19952560
Alignment:
Q  539 gttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtctt 606  Q
    |||||||||||||||||||| | || ||||||||| ||||||| ||||| ||||| || || ||||||    
T  19952627 gttgcctcaactcttcatctttcttttccctcaaagccattaaccgtaagatctcctcctgctgtctt 19952560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 456 - 614
Target Start/End: Original strand, 26353460 - 26353623
Alignment:
Q  456 tgagtttcatgaagagaattcaaaaacaaatataaagttttaaga------tgatggtggttgttgattccttagaacactagtgagaagttgcctcaac 549  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||      ||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  26353460 tgagtttcatgaagggaattcaaaaacaaa-ataaagttttaagaagaagatgatggtggttgttgattcttcagaacactagtgaggagttgcctcaac 26353558  T
Q  550 tcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacg 614  Q
    |||||||| || |||||| || |||| ||||||||||| |||||||| ||||||||||| |||||    
T  26353559 tcttcatccctcttctccttcgaatctattaatcgtaacatctcttcctgttgtcttgccagacg 26353623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 454 - 608
Target Start/End: Complemental strand, 9816621 - 9816465
Alignment:
Q  454 catgagtttcatgaagagaattcaaaaacaaatataaagttttaagatga---tggtggttgttgattccttagaacactagtgagaagttgcctcaact 550  Q
    ||||||||||| |||||||||| |||| |||| |||||| ||||||| ||   |||||||||||||||| | |||| |||||||||||| ||||||||||    
T  9816621 catgagtttcaggaagagaattaaaaagcaaa-ataaaggtttaagaagacgatggtggttgttgattcttgagaaaactagtgagaagatgcctcaact 9816523  T
Q  551 cttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgc 608  Q
    ||||||| || |||||| ||||||| |||||  | || ||||||||||||||||||||    
T  9816522 cttcatccctcttctccttcaaatctattaactgaaacatctcttcttgttgtcttgc 9816465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 502 - 616
Target Start/End: Complemental strand, 1718667 - 1718553
Alignment:
Q  502 gatggtggttgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaatcgtaatatctcttcttgtt 601  Q
    |||| ||| ||||||||||| | |||||||||||| ||||||||||||||||||||  | ||||||| |||| ||||||| ||||| |||||||| ||||    
T  1718667 gatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaacatctcttcctgtt 1718568  T
Q  602 gtcttgctagacgtg 616  Q
    ||||||| |||||||    
T  1718567 gtcttgccagacgtg 1718553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 453
Target Start/End: Original strand, 13789574 - 13789617
Alignment:
Q  410 accacatcaagcactttcatttacccgacgtgggactcctaaca 453  Q
    ||||||||||||||||| | |||||||| |||||||||||||||    
T  13789574 accacatcaagcacttttagttacccgatgtgggactcctaaca 13789617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 8356288 - 8356333
Alignment:
Q  410 accacatcaagcactttcatttacccgacgtgggactcctaacaca 455  Q
    ||||||||||||||||| || ||| ||| |||||||||||||||||    
T  8356288 accacatcaagcactttgatatactcgatgtgggactcctaacaca 8356333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 27187479 - 27187537
Alignment:
Q  394 tgttaggacttaagccaccacatcaagcactttcatttacccgacgtgggactcctaaca 453  Q
    ||||||||||||||  ||||||||||||||||| || ||| ||| |||||||||||||||    
T  27187479 tgttaggacttaagt-accacatcaagcactttgatctactcgatgtgggactcctaaca 27187537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 27837293 - 27837351
Alignment:
Q  394 tgttaggacttaagccaccacatcaagcactttcatttacccgacgtgggactcctaaca 453  Q
    ||||||||||||||  ||||||||||||||||| || ||| ||| |||||||||||||||    
T  27837293 tgttaggacttaagt-accacatcaagcactttgatctactcgatgtgggactcctaaca 27837351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University