View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_71 (Length: 240)
Name: NF8969_low_71
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 18303946 - 18304160
Alignment:
| Q |
19 |
gagaggaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttatccctatctgtttgcaaggaaattctcaccggaaactctagcacc |
118 |
Q |
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| T |
18303946 |
gagaggaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttacccctatctgtttgcaaggaaattctcaccggaaactctagcacc |
18304045 |
T |
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| Q |
119 |
gttgatggatatagcttatgatgtcattttcagagattgaaacttgcactgcacattttagtatttctagag-annnnnnnnnatttcactgtctaaatt |
217 |
Q |
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| T |
18304046 |
gttgatggatatagcttatgatgtcattttcagagattgaaacttgcactgcacactttggtatttctagagaatttttttttatttcactgtctaaatt |
18304145 |
T |
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| Q |
218 |
tgctattttcagggt |
232 |
Q |
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| T |
18304146 |
tgctatttttagggt |
18304160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 18339709 - 18339604
Alignment:
| Q |
60 |
tcgaattccagttatccctatctgtttgcaaggaaattctcaccggaaactctagcaccgttgatggatatagcttatgatgtcattttcagagattgaa |
159 |
Q |
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| T |
18339709 |
tcgaattcgagttattcatatctatttgcgaggaaattctcgccggagtgtcttgctccgctgatggatatagccgatgatgtcattttccgggattgaa |
18339610 |
T |
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| Q |
160 |
acttgc |
165 |
Q |
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||||| |
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| T |
18339609 |
gcttgc |
18339604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 18344903 - 18344779
Alignment:
| Q |
24 |
gaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttatccctatctgtttgcaaggaaattctcaccggaaactctagcaccgttga |
123 |
Q |
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| T |
18344903 |
gaggtgtcgccggagctttttcgtcagctgagggtctccaattggagttattcatatctattcgctaggaaattctcgccggaatgtcttgctccgttga |
18344804 |
T |
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| Q |
124 |
tggatatagcttatgatgtcatttt |
148 |
Q |
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|| |||| || ||||||||||||| |
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| T |
18344803 |
tgaatattgccgatgatgtcatttt |
18344779 |
T |
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