View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_72 (Length: 240)
Name: NF8969_low_72
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_72 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 1402607 - 1402384
Alignment:
| Q |
8 |
gacatcatcaactaaagaatcgaaactaggaatatagcaatgaagaccttctgaaagaccaaatcctggataatccatagcaaaaactccatatccagca |
107 |
Q |
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| T |
1402607 |
gacatcatcaactaaagaatcgaaactaggaatatagcaatgaagaccttctgaaagaccaaatcctggataatccatagcaaaaactccatatccatca |
1402508 |
T |
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| Q |
108 |
catgccaattttctagctattcctggaaataagtttcacaatatgatcgagtcaatcgagtcagtaatcgacaatgtaacttatctagtaaaacaaagca |
207 |
Q |
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| T |
1402507 |
catgccaattttctagctattcctgcaaataagtttcacaatatgatcga---------gtcagtaatcgacaatgtaacttatctagtaaaacaaagca |
1402417 |
T |
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| Q |
208 |
accagaacttaacaccagctactacatgccttc |
240 |
Q |
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| T |
1402416 |
accagaacttaacaccagctactacataccttc |
1402384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 7087077 - 7086970
Alignment:
| Q |
30 |
aaactaggaatatagcaatgaagaccttctgaaagaccaaatcctggataatccatagcaaaaactccatatccagcacatgccaattttctagctattc |
129 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
7087077 |
aaactagtaatatagccatgaagaccttctgaaagaccaaatcctggataatccatagcaaaaactccatatccacatgatgcaagttttctagctattc |
7086978 |
T |
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| Q |
130 |
ctggaaat |
137 |
Q |
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| T |
7086977 |
ctgcaaat |
7086970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 8805351 - 8805458
Alignment:
| Q |
30 |
aaactaggaatatagcaatgaagaccttctgaaagaccaaatcctggataatccatagcaaaaactccatatccagcacatgccaattttctagctattc |
129 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
8805351 |
aaactagtaatatagccatgaagaccttctgaaagaccaaatcctggataatccatagcaaaaactccatatccacatgatgcaagttttctagctattc |
8805450 |
T |
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| Q |
130 |
ctggaaat |
137 |
Q |
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||| |||| |
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| T |
8805451 |
ctgcaaat |
8805458 |
T |
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