View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_77 (Length: 207)
Name: NF8969_low_77
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 40879047 - 40879191
Alignment:
| Q |
48 |
tgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaacttcagcaagtctaatcaaca |
147 |
Q |
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| T |
40879047 |
tgttttaattgtcaaaaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaacttcagcaagtctaatcaaca |
40879146 |
T |
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| Q |
148 |
atttacaagttcgattgaacaatgtttaaaattaagtggttatca |
192 |
Q |
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| T |
40879147 |
atttacaagttcgatggaactatgtttaaaatcaattggttatca |
40879191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 9624607 - 9624446
Alignment:
| Q |
17 |
attttattatatccatatttatgtgcaaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcaca-- |
114 |
Q |
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| T |
9624607 |
attttattatatccatatttatcttgaaggttattttaattgctaacaaatggtatcaagagccgggttgaactaagatggctgcaatttcaagcacatg |
9624508 |
T |
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| Q |
115 |
ggagtaacccaacttcagcaagtctaatcaacaatttacaagttcgattgaacaatgtttaa |
176 |
Q |
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| T |
9624507 |
agagtaacccaacttcagcaagtctaatcaactatttacaagttcgatggaactatgtttaa |
9624446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 9620200 - 9620039
Alignment:
| Q |
18 |
ttttattatatccatatttatgtgcaaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacagga |
117 |
Q |
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| T |
9620200 |
ttttattatatctatatttatctagaaggttgtattaattgccagtaaatggtatcaagagcctggttgaactaaaatggctgcaatttcaagtgcacga |
9620101 |
T |
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| Q |
118 |
gtaacccaacttcagcaagtctaatcaacaatttacaagttcgattgaacaatgtttaaaat |
179 |
Q |
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| T |
9620100 |
gtaaccaaacttcagcaagtctaatcaacaatttacaagttcgatgaaactacgtttaaaat |
9620039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 17390063 - 17389956
Alignment:
| Q |
51 |
tttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaacttcagcaagtctaatcaacaatt |
150 |
Q |
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| T |
17390063 |
tttaattgccaccaaatggtatcaagagccatgttgaactaagatggcagcaaattcaagcacacgagtaacccaaattcaggaggtacaatcaagagtt |
17389964 |
T |
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| Q |
151 |
tacaagtt |
158 |
Q |
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| T |
17389963 |
tacaagtt |
17389956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 40254008 - 40254085
Alignment:
| Q |
101 |
caaattcaagcacaggagtaacccaacttcagcaagtctaatcaacaatttacaagttcgattgaacaatgtttaaaa |
178 |
Q |
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| T |
40254008 |
caaattcaagcacaagattaacctaacttcaacaagtctaatcaataatttacaagtttgatcgaactatgtttaaaa |
40254085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 40253947 - 40253987
Alignment:
| Q |
53 |
taattgtcaacaaatggtatcaagagccaggttgaactaag |
93 |
Q |
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| T |
40253947 |
taattgccaacaaatggtatcaagagccacgttgaactaag |
40253987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 7419365 - 7419498
Alignment:
| Q |
25 |
atatccatatttatgtgcaaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaaccc |
124 |
Q |
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| T |
7419365 |
atatccatatttatgtagaaggctgttttaattaccaataaatggtatcaagagccaagttaaactaagatgctagcaatttcaagcacatgtgtaacct |
7419464 |
T |
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| Q |
125 |
aacttcagcaagtctaatcaacaatttacaagtt |
158 |
Q |
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| T |
7419465 |
aacttcagtaagtctaatcaacaatttataagtt |
7419498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 32240531 - 32240646
Alignment:
| Q |
43 |
aaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaacttcagcaagtctaat |
142 |
Q |
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| T |
32240531 |
aaggctgttttaattaccaagaaatggtatcaagagcctagttgaactaagatgccagcaatttcaagcacatgagtaacctaacttgagtaagtctaat |
32240630 |
T |
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| Q |
143 |
caacaatttacaagtt |
158 |
Q |
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| T |
32240631 |
caacaatttataagtt |
32240646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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