View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_8 (Length: 620)
Name: NF8969_low_8
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 45142347 - 45142892
Alignment:
| Q |
1 |
ttctgtaatcttttattttgtgtgtgtgtttcgacttcaattcaatttcaagaatttccttggatccaattttaatctattgtttcataacaatagattc |
100 |
Q |
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| T |
45142347 |
ttctgtaatcttttattttgtgtgtgtgtttcgacttcaattcaatttcaagaatttccttgcatccaattttaatctattatttcataacaatagattg |
45142446 |
T |
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| Q |
101 |
aagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatgaacttgagtacttgacaagttgctgattggtttgaacttgatcattt |
200 |
Q |
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| T |
45142447 |
aagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatgaacttgagtacttgacaagttgctgattggtttgaacttgatcattt |
45142546 |
T |
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| Q |
201 |
acaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatccttgcactgaagaatcttcaaatatttgacagagtactattaaacaag |
300 |
Q |
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| T |
45142547 |
acaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatccttgcactgaagaatcttcaaatatttgacagagtactattaaacaag |
45142646 |
T |
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| Q |
301 |
ttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctcaaaatcattccaatcagcctggagagataagtgatgcagaaacagatt |
400 |
Q |
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| T |
45142647 |
ttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctcaaaatcattccaatcagcctggagagataagtgatgcagaaacagatt |
45142746 |
T |
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| Q |
401 |
gagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaacttctcgtgtttatagtttcatccagcttctagagtggaaaagtgtttaa |
500 |
Q |
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| T |
45142747 |
gagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaacttctcgtgtttatagtttcatccggcttctagagtggaaaagtgtttaa |
45142846 |
T |
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| Q |
501 |
cacggtctacaaaaaacaaatgcttggaaattgtttgaaactctaa |
546 |
Q |
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| T |
45142847 |
cacggtctacaacaaacaaatgcttggaaattgtttgatactctaa |
45142892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 45142927 - 45142990
Alignment:
| Q |
543 |
ctaatattcattttctcttgtttatttttgaattaacactgattaaatgactgtcttatctgtg |
606 |
Q |
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| T |
45142927 |
ctaatattcattttctcttgtttatttttgaattaacactgattaaatgactgtcttatctgtg |
45142990 |
T |
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