View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8969_low_9 (Length: 606)
Name: NF8969_low_9
Description: NF8969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8969_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 15 - 591
Target Start/End: Original strand, 51273270 - 51273831
Alignment:
| Q |
15 |
agagaaaaagagaaaattcaaagagtagagaacttatgttgtattgttcaagtgcg-----ttcatacgaccgagtattttagaccaagtnnnnnnncac |
109 |
Q |
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| T |
51273270 |
agagaaaaagagaaaattcaaagagtagagaacttaagttgtattgttcaagtgcgaataattcatacgaccgagtattttagaccaagtaaa----cac |
51273365 |
T |
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| Q |
110 |
gcatggaccagctcctagctagtaatagttgatggactagttcatagatat--cttaggattcaaaagacatataaagaaacaattgttcaacaaaaatt |
207 |
Q |
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| T |
51273366 |
gcatggaccagctcctagctagt------------------tcatagatatatcttaggattcaaaagacatataaagaaacaattgttcaacaaaaatt |
51273447 |
T |
|
| Q |
208 |
tgcacaatcaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatg |
307 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273448 |
tgcacaaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatg |
51273547 |
T |
|
| Q |
308 |
gagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaa |
407 |
Q |
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| T |
51273548 |
gagaatttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaa |
51273647 |
T |
|
| Q |
408 |
tctcacagctccaattcattgaacgatcaattcttcatcaccatactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattt |
507 |
Q |
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| T |
51273648 |
tctcacagctccaattcattgaacgatcaattcttcatcaccatactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattt |
51273747 |
T |
|
| Q |
508 |
tatctcaaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttct |
591 |
Q |
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| T |
51273748 |
tatctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttct |
51273831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 527
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
486 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
527 |
Q |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 217 - 592
Target Start/End: Complemental strand, 5051910 - 5051535
Alignment:
| Q |
217 |
aagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattta |
316 |
Q |
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| T |
5051910 |
aagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggagaactta |
5051812 |
T |
|
| Q |
317 |
tcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacagc |
416 |
Q |
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| T |
5051811 |
tcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagc |
5051713 |
T |
|
| Q |
417 |
tccaattcattgaacgatcaattcttcatcacc---atactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctc |
513 |
Q |
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| T |
5051712 |
tccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccag-aaaagtagcacttcaattttatctc |
5051614 |
T |
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| Q |
514 |
aaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttctg |
592 |
Q |
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|||||||||||| ||| | | ||||||| | ||||| ||||||||||||||| ||| |||||||| | | |||||||| |
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| T |
5051613 |
aaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctg |
5051535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 282 - 455
Target Start/End: Original strand, 14907599 - 14907773
Alignment:
| Q |
282 |
tagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatc |
381 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| |
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| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
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| Q |
382 |
aatctcaaagcgtttcttagcttt-aatctcacagctccaattcattgaacgatcaattcttcatcaccatactt |
455 |
Q |
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| T |
14907699 |
catctcaaagcgcatcttagctttaaatttcaaatctccaattcattgaatgatccattattcatcaccatactt |
14907773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 528 - 591
Target Start/End: Original strand, 14907797 - 14907860
Alignment:
| Q |
528 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttct |
591 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttct |
14907860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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