View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_high_3 (Length: 410)
Name: NF8970_high_3
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 5771526 - 5771901
Alignment:
| Q |
18 |
atcatttaaggatattggcttatctgagcttgtgaaatcattttctgtactaacccttttcttaatccaaacagctttgctactcaaataataactgaac |
117 |
Q |
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| T |
5771526 |
atcatttaaggatattggcttatctgagcttgtgaaatcattttctgtactaacccttttcttaatccaaacagctt-gctactcaaata---actgaac |
5771621 |
T |
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| Q |
118 |
attttgaagctctaggtaggttctgaaattagtgtaagtgtagtgtgtcgtggtgagtttctaatacatttttcttacatgattcgtcatacatgaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771622 |
attttgaagctctaggtaggttctgaaattagtgtaagtgtagtgtgtcgtggtgagtttctaatacatttttcttacatgattcgtcatacatgaattt |
5771721 |
T |
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| Q |
218 |
tatgcctcgctcaaaacataggttatgtttgtttttgttttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctcnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771722 |
tatgcctcgctcaaaacataggttatgtttgtttttgttttgtccaatgaggcataagcatactaaaaaatctattttgattggtatattctcttttttt |
5771821 |
T |
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| Q |
318 |
ctatagcttgttggaaggtttgacatgttacgacaatctaagacnnnnnnngctacctcatattattgtaagtgatgtcca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5771822 |
ctatagcttgttggaaggtttgacatgttacgacaatctaagac-aacaaagctacctcatattattgtaagtgatgtcca |
5771901 |
T |
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