View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8970_high_4 (Length: 401)

Name: NF8970_high_4
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8970_high_4
NF8970_high_4
[»] chr5 (4 HSPs)
chr5 (61-388)||(7392593-7392920)
chr5 (137-344)||(13954871-13955078)
chr5 (230-289)||(29685506-29685566)
chr5 (232-289)||(12566647-12566704)
[»] chr8 (1 HSPs)
chr8 (132-339)||(10248998-10249205)
[»] chr1 (8 HSPs)
chr1 (182-344)||(7856985-7857147)
chr1 (226-294)||(16146873-16146941)
chr1 (226-299)||(24658285-24658358)
chr1 (233-294)||(52277939-52278000)
chr1 (148-261)||(34774648-34774761)
chr1 (252-299)||(46815065-46815112)
chr1 (230-289)||(4391311-4391371)
chr1 (232-294)||(8327249-8327311)
[»] chr2 (4 HSPs)
chr2 (181-289)||(14107050-14107158)
chr2 (208-289)||(37771319-37771400)
chr2 (221-344)||(7873622-7873744)
chr2 (230-289)||(42049044-42049104)
[»] scaffold0063 (1 HSPs)
scaffold0063 (210-340)||(57453-57583)
[»] scaffold0050 (1 HSPs)
scaffold0050 (208-299)||(36173-36264)
[»] chr6 (1 HSPs)
chr6 (132-288)||(20702453-20702607)
[»] chr4 (4 HSPs)
chr4 (220-340)||(38640089-38640209)
chr4 (232-299)||(53814155-53814222)
chr4 (230-289)||(1798854-1798914)
chr4 (230-289)||(10388271-10388331)
[»] chr3 (5 HSPs)
chr3 (210-294)||(14193424-14193508)
chr3 (228-287)||(40024152-40024211)
chr3 (208-294)||(25647167-25647253)
chr3 (210-284)||(37122807-37122881)
chr3 (226-299)||(47235048-47235122)
[»] chr7 (3 HSPs)
chr7 (226-289)||(3477752-3477815)
chr7 (228-287)||(34389397-34389456)
chr7 (235-299)||(42533940-42534004)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 61 - 388
Target Start/End: Complemental strand, 7392920 - 7392593
Alignment:
Q  61 cgtttccggcggcggaagttgggtatgttgttggtgggtggtccggttagagtgagtgttggtagtgacggggtgatggtgacgaatgtgtggtgtgaag 160  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||     
T  7392920 cgtttccggcggcggaagttgggtcggctgttggtgggtggtccggttggagtgagtgttggtagtgacggggtggtggtgacgaatgtgtggtgtgaat 7392821  T
Q  161 ggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 260  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7392820 ggggtgaattgtggagccgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 7392721  T
Q  261 ggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggtcccacgacgtcactat 360  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |    
T  7392720 ggatcgtttgtcgtcgtaaggatcgtggtggttagggtttgtttacactggtggccatgggcttcagattttgcttgttttggtcccatgacgtcactgt 7392621  T
Q  361 gtgttccttatttttactattctgatgt 388  Q
    |||||||||||||||||||||| |||||    
T  7392620 gtgttccttatttttactattccgatgt 7392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 137 - 344
Target Start/End: Complemental strand, 13955078 - 13954871
Alignment:
Q  137 tggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacga 236  Q
    |||||||| | |||| ||||| |||||||||  | |||  ||| |||||||  || ||||||||||| |  |||||||| || ||||| |||||||||||    
T  13955078 tggtgacggacgtgtcgtgtggagggggtgatgtatggtttcgataggtgttatctgtttccggtggctacaggtgtggcggcatctctttcattcacga 13954979  T
Q  237 ttaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgctt 336  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||| ||| ||| || | |||||||||||||||||||    
T  13954978 ttaatcctccttcaacaaactcccgaatcgtttgtcgttgtaaggatcgtggtggttggggtttgttcacgacggtggtcgtgggcttcagattttgctt 13954879  T
Q  337 gttttggt 344  Q
    | ||||||    
T  13954878 gatttggt 13954871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 29685506 - 29685566
Alignment:
Q  230 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||||||||||||||| ||  || |||||||| |||||| ||||||||||||||||||||    
T  29685506 ttcacgattaatcctccttcttcgcaactcccgaatcgttcgtcgtcgtaaggatcgtggt 29685566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 12566647 - 12566704
Alignment:
Q  232 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||||||||||||| || |||  ||||||||||||| |||||| || ||||||||||    
T  12566647 cacgattaatcctccttcgacgctctcccggatcgttcgtcgtcatatggatcgtggt 12566704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 339
Target Start/End: Complemental strand, 10249205 - 10248998
Alignment:
Q  132 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 231  Q
    |||| |||||||| | |||||||||| |||||||||  ||||| | || |||||||| |||||||||| ||  |  || ||||| || ||||| ||||||    
T  10249205 ggtggtggtgacggacgtgtggtgtggagggggtgatgtgtggtgccgataggtgtggtccgtttccgatgactacagttgtggcggcatctctttcatt 10249106  T
Q  232 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattt 331  Q
    ||||||||||||||| |||||||||||||  |||||||||  |||||||||||||||| |||||||||||||  | |||| ||   ||||||||||||||    
T  10249105 cacgattaatcctccttcaacgaactcccaaatcgtttgtgatcgtaaggatcgtggtggttggggtttgttcgcaccggtggttgtgggcttcagattt 10249006  T
Q  332 tgcttgtt 339  Q
    ||||||||    
T  10249005 tgcttgtt 10248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 344
Target Start/End: Original strand, 7856985 - 7857147
Alignment:
Q  182 aggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaagg 281  Q
    ||||||| | ||||||||||||  ||| |||||| || ||||| | |||||| |||||||||||| |||||||||| | |||||||||||||||||||||    
T  7856985 aggtgtggttcgtttccggtggccgtacgtgtggaggcatctcttccattcatgattaatcctccttcaacgaacttctggatcgtttgtcgtcgtaagg 7857084  T
Q  282 atcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggt 344  Q
    |||||| | |||| ||||||||   | ||| || | ||||||||||||| |||||||||||||    
T  7857085 atcgtgatggttgaggtttgttcgtgtcggtggtcgtgggcttcagattctgcttgttttggt 7857147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 16146873 - 16146941
Alignment:
Q  226 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 294  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  16146873 ttcatccacgattaatcctccttcaacgaactcccggatcgtttgtcgtcataaggatcgtggtggttg 16146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 24658285 - 24658358
Alignment:
Q  226 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 299  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  24658285 ttcatccatgattaatcctccttcaacgaactcccggattgtttgttgtcgtaaggatcgtggtggttgtggtt 24658358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 52277939 - 52278000
Alignment:
Q  233 acgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 294  Q
    |||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||    
T  52277939 acgattaatcctccatcaacgaacttctggatcgtatgtcgtcgtaaggatcgtggtggttg 52278000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 34774648 - 34774761
Alignment:
Q  148 gtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccc 247  Q
    |||||||||| |||||||||   |||| | || |||||||| || ||||||||||| |  |||||||| |  ||||| ||||| |||||||||||||||     
T  34774648 gtgtggtgtggagggggtgataagtggtgccgataggtgtggtctgtttccggtggcttcaggtgtggcgacatctctttcatacacgattaatcctcct 34774747  T
Q  248 tcaacgaactcccg 261  Q
    | ||||||||||||    
T  34774748 ttaacgaactcccg 34774761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 46815112 - 46815065
Alignment:
Q  252 cgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 299  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  46815112 cgaactcccggatcgtttgttgtcgtaaggatcgtggtggttgtggtt 46815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 4391311 - 4391371
Alignment:
Q  230 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||||||||||||||| ||  || |||||| |||||||| ||||||||||||||||||||    
T  4391311 ttcacgattaatcctccttcttcgcaactcctggatcgttcgtcgtcgtaaggatcgtggt 4391371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 8327311 - 8327249
Alignment:
Q  232 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 294  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||  |||||| ||| ||||    
T  8327311 cacgattaatcctccctcatcgtgctcccggatcgttcgtcgtcgtttggatcggggtggttg 8327249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 14107158 - 14107050
Alignment:
Q  181 taggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaag 280  Q
    |||||||| ||||||||| | || || | ||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  14107158 taggtgtgatccgtttccagcggctgcaagtgtggtggcatctctttcattcacgattaatcttccttcaacgaactcccggatcgtttgtcgtcgtaag 14107059  T
Q  281 gatcgtggt 289  Q
    |||| ||||    
T  14107058 gatcatggt 14107050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 37771400 - 37771319
Alignment:
Q  208 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||||||||| ||||  |||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||    
T  37771400 aggtgtggtggaatctttttcagtcatgattaatcctctttcaacgaactcccggatcgtttgtcgttgtaagaatcgtggt 37771319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 344
Target Start/End: Original strand, 7873622 - 7873744
Alignment:
Q  221 tctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgg 320  Q
    |||| |||||| |||||||||||| | ||||||||||  ||||| |||||||||| ||||||||||||| |||| || ||||| ||| ||| |||| |||    
T  7873622 tctctttcatttacgattaatccttcttcaacgaactttcggatggtttgtcgtcataaggatcgtggtggttgtgg-ttgttcacg-cggtggccgtgg 7873719  T
Q  321 -gcttcagattttgcttgttttggt 344  Q
     |||| |||||||||||||||||||    
T  7873720 tgctttagattttgcttgttttggt 7873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 42049104 - 42049044
Alignment:
Q  230 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||||||||||||||| ||  || |||| ||||||||||  |||||||||||||||||||    
T  42049104 ttcacgattaatcctccttcttcgtaacttccggatcgttcctcgtcgtaaggatcgtggt 42049044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 57453 - 57583
Alignment:
Q  210 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgcc 309  Q
    |||||| | |||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| || |||||  |||     
T  57453 gtgtggcgatatctctttctttcacgattaatcctccttcaacaaactcccggatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgct 57551  T
Q  310 ggcggccatgg-gcttcagattttgcttgttt 340  Q
    || |||| ||| ||||| ||||||||||||||    
T  57552 ggtggccgtggtgcttcggattttgcttgttt 57583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 36173 - 36264
Alignment:
Q  208 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 299  Q
    |||||||| |||||||| | |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  36173 aggtgtggcggtatctcttccattcatgattaatcctccttcaacgaactcctggatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 36264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 20702607 - 20702453
Alignment:
Q  132 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 231  Q
    |||| |||||||| | |||||||||||||||||  |  ||||| |||| || ||||| |||| |||||   | || ||||||||||| ||||  ||||||    
T  20702607 ggtggtggtgacggacgtgtggtgtgaaggggg--atgtgtggtgtcgatatgtgtgatccggttccgacagctgcaggtgtggtggcatctatttcatt 20702510  T
Q  232 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtgg 288  Q
    || |||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  20702509 catgattaatcctccttcaacgaactcccggatcgtttgttatcgtaaggatcgtgg 20702453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 38640209 - 38640089
Alignment:
Q  220 atctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatg 319  Q
    ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| || |||||  |||||| || | ||    
T  38640209 atctctttcattcatgattaatcctccttcaacgaactcccgaatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgccggtgggcctg 38640111  T
Q  320 g-gcttcagattttgcttgttt 340  Q
    | ||||||| ||||||||||||    
T  38640110 gtgcttcagtttttgcttgttt 38640089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 53814222 - 53814155
Alignment:
Q  232 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 299  Q
    ||||||| ||||||| |||||| |||| ||||| ||| |||||||||||||||||||| |||| ||||    
T  53814222 cacgattgatcctccttcaacgcactctcggattgttcgtcgtcgtaaggatcgtggtggttgtggtt 53814155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 1798854 - 1798914
Alignment:
Q  230 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||||||||||||||| ||  || ||||||||||||||| ||| ||||||||||||||||    
T  1798854 ttcacgattaatcctccttcttcgcaactcccggatcgttcgtcttcgtaaggatcgtggt 1798914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 10388271 - 10388331
Alignment:
Q  230 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    ||||| ||||||||||| ||  || ||||||||||||||| ||||||||||||||| ||||    
T  10388271 ttcacaattaatcctccttcttcgcaactcccggatcgttcgtcgtcgtaaggatcatggt 10388331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 14193424 - 14193508
Alignment:
Q  210 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 294  Q
    ||||||||||||||| | ||||||||||||||| | | |||||||  ||||||||||||||||||||||||||||||||| ||||    
T  14193424 gtgtggtggtatctcttccattcacgattaatcatacttcaacgagatcccggatcgtttgtcgtcgtaaggatcgtggtggttg 14193508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 40024211 - 40024152
Alignment:
Q  228 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 287  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  40024211 cattcatgattaatcctccttcaacaaactctcggatcgtttgtcgtcgtaaggatcgtg 40024152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 25647167 - 25647253
Alignment:
Q  208 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 294  Q
    |||||||| | |||||| | |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  25647167 aggtgtggcgatatctcttccattcatgattaatcatccttcaacggactcccggatcgtttgtcatcgtaaggaccgtggtggttg 25647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 37122807 - 37122881
Alignment:
Q  210 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatc 284  Q
    ||||||||  ||||| |||||||| ||||||||||||   |||||||||||  ||||||||||||||||||||||    
T  37122807 gtgtggtgacatctctttcattcatgattaatcctcctggaacgaactcccatatcgtttgtcgtcgtaaggatc 37122881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 47235048 - 47235122
Alignment:
Q  226 ttcattcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 299  Q
    ||||| ||||||||||||||| |||||| ||||| ||| ||||| || || |||||||||||||| |||| ||||    
T  47235048 ttcatccacgattaatcctccttcaacgcaactctcgggtcgttcgttgttgtaaggatcgtggtggttgtggtt 47235122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 3477752 - 3477815
Alignment:
Q  226 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 289  Q
    |||||| |||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||    
T  3477752 ttcatttacgattaatcctccttcaacgaactcctggctcgtttgtcatcgtaaggatcgtggt 3477815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 34389397 - 34389456
Alignment:
Q  228 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 287  Q
    |||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  34389397 cattcatgattaatcctccttcaacaaacttccggatcgtttgtcgtcgtaaggatcgtg 34389456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 42534004 - 42533940
Alignment:
Q  235 gattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 299  Q
    |||||||||||  |||||||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  42534004 gattaatcctctttcaacgaacttccgaatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 42533940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University