View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_high_5 (Length: 396)
Name: NF8970_high_5
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 13538674 - 13538565
Alignment:
| Q |
278 |
atccttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggtaatctccagattacaaaatgtgtattttta |
377 |
Q |
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| T |
13538674 |
atccttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggtaatctccagattacaaaatgtgtattttta |
13538575 |
T |
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| Q |
378 |
tcaatgatgt |
387 |
Q |
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| T |
13538574 |
ttaatgatgt |
13538565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 13538984 - 13538916
Alignment:
| Q |
118 |
ctaggattgtacttcaaagtaagtttgctcaaactttcacataacttggttggttttcataattaaatc |
186 |
Q |
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| T |
13538984 |
ctaggattgtacttcaaagtaagtttgctcaaactttcacataacttggttggttttcataattaaatc |
13538916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13539101 - 13539033
Alignment:
| Q |
1 |
tcatctgattctgaggtgtttgaggttgaaaagctacttgaagtttgctatggcaatcccaacaaagac |
69 |
Q |
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| T |
13539101 |
tcatctgattctgaggtgtttgaggttgaaaagctacttcaagtctgctatggcaatcccaacaaagac |
13539033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 13538760 - 13538704
Alignment:
| Q |
187 |
acaacttttcttgtagctttaacttgtgtattgacactttcagttagcggccattgc |
243 |
Q |
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| T |
13538760 |
acaacttttcttatagctttaacttgtgtattgacactttcaggtagcggccattgc |
13538704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 31942065 - 31941999
Alignment:
| Q |
282 |
ttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggta |
348 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||||| |
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| T |
31942065 |
ttcaggtgcattggaagggttacgattccagtaatgatacgtgggagcccattgagggcttgaggta |
31941999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 34476593 - 34476536
Alignment:
| Q |
309 |
ccagttacgatacatgggagccaattgaaggcttgaggtaatctccagattacaaaat |
366 |
Q |
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| T |
34476593 |
ccagttacgatacatgagagccaattgagggcttgaggtaaacttcatatttcaaaat |
34476536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 1340260 - 1340194
Alignment:
| Q |
282 |
ttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggta |
348 |
Q |
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| T |
1340260 |
ttcaggtgcagtggaagggttacgattccagttatgatacatgggagcccattgagggcttgaggta |
1340194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 9392435 - 9392369
Alignment:
| Q |
282 |
ttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggta |
348 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |
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| T |
9392435 |
ttcaggtgcattggaagggttacgattccagttatgatacttgggagcccattgagggcttgaggta |
9392369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 5642126 - 5642060
Alignment:
| Q |
282 |
ttcaggtgcagtggaagggttacgattccagttacgatacatgggagccaattgaaggcttgaggta |
348 |
Q |
| |
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|||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||||||| |
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| T |
5642126 |
ttcaggtgcagtggaagggttatgacaccagttatgatacatgggagccaattgagggcttgaggta |
5642060 |
T |
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