View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_low_1 (Length: 917)
Name: NF8970_low_1
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 467 - 908
Target Start/End: Complemental strand, 53830367 - 53829921
Alignment:
| Q |
467 |
cgctcattaacattacgaagtggatcaccaaagtttatacatgagggaaatgatggaagaaaacttattaaaagaaaatacagccaccaatgacaacaga |
566 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830367 |
cgctcattaacattacgaagtggatcaccacagtttatacatgagggaaatgatggaagaaaacttattaaaagaaaatacagccaccaatgacaacaga |
53830268 |
T |
|
| Q |
567 |
aacaaaaaagaccccttaaattaaaagatgaacgtcctaat----atatattttaagataagaaaataacgtcctaattatactaattaggctaagcatt |
662 |
Q |
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| T |
53830267 |
aacaaaaaagaccccttaaattaaaagatgaacgtcctaattaatatatattttaagatcagaaaataacgtcctaattatactaattaggctaagtatt |
53830168 |
T |
|
| Q |
663 |
t-acatatatgttgttattactggatataggactggccagtgatgtctatatcacgatccccagatgaaggaggaggattatgtttgggcttgatagtgt |
761 |
Q |
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| T |
53830167 |
ttacatatatgttgttattactggatataggactggccagtgatgtctatatcacgatccccagatgaaggaggaggattatgtttgggcttgatagtgt |
53830068 |
T |
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| Q |
762 |
ccttatcaacaggtccatcagcactttgagtctcacttgctggttgtttggtttgtttttctggttgccctttttctgtgccatacattccaccaccata |
861 |
Q |
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| T |
53830067 |
ccttatcaacaggaccatcagcactttgagtctcacttgctggttgtttggtttgtttttctggttgccctttttctgtgccatacattccaccaccata |
53829968 |
T |
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| Q |
862 |
agcgccatgtgtgactggctccatcgttgagatttgatgtccatctc |
908 |
Q |
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| T |
53829967 |
agcgccatgtgtgactggctccatcgttgagatttgaggtccttctc |
53829921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 53830748 - 53830367
Alignment:
| Q |
18 |
tattgttgcaagagtttctatttctattatgataactcttatttcacaaaaagagagagttgttccaattattttttcattgataagtgatcttgtgggg |
117 |
Q |
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| T |
53830748 |
tattgttgcaagagtttctatttctattatgataactcttatttcacaaaaagagagagttgttccaattattttttcattgataagtgatctagtgggg |
53830649 |
T |
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| Q |
118 |
cataaagggggaagggtgaaaaactaccgctct----catgcgcctgcagaaaactcagctgttctaaataataaacattgaatgatagctaaaatataa |
213 |
Q |
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| T |
53830648 |
cataaagggggaagggtgaaaaactaccgctctaatgcatgcgcctgcagaaaactcagctgttctaaataataaacattgaatgatagctaaaatataa |
53830549 |
T |
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| Q |
214 |
cgtgctctaaataataaaaatgttccttctttctctataggaatgacataaacaaacactaattatttgatacacttttaacaaaataatcataattaaa |
313 |
Q |
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| T |
53830548 |
cgtgctctaaataataaaaatgttccttctttctctataggaatgacataaacaaacactaattatttgatacac-tttaacaaaataatcataattaaa |
53830450 |
T |
|
| Q |
314 |
cattgaagttaggcaaaagtttaaattaccattcgattttcaaaccaaaataaataaattaccattccatttgatccttacac |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830449 |
cattgaagttaggcaaaagtttaaattaccattcgattttcaaaccaaaataaataaattaccattccatttgatccttacac |
53830367 |
T |
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