View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8970_low_11 (Length: 495)
Name: NF8970_low_11
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_11 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 3036840 - 3036378
Alignment:
| Q |
18 |
agaaaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttc-cc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
3036840 |
agaaaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttttcc |
3036741 |
T |
|
| Q |
117 |
cataggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036740 |
cataggggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctg |
3036641 |
T |
|
| Q |
217 |
aacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcg |
316 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036640 |
aatgccctcttcctctaccatatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcg |
3036541 |
T |
|
| Q |
317 |
tcgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttactt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036540 |
tcgttcttgaacaagtaagctactctgaagttcatcgatgaagagtgcagtcacatcattagattcttcaatagagcacaccacataattgaacttactt |
3036441 |
T |
|
| Q |
417 |
gttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036440 |
gttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc |
3036378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 16863587 - 16863125
Alignment:
| Q |
18 |
agaaaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttcccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| | |||||||| | ||| |
|
|
| T |
16863587 |
agaaaccatacctcatctttggcatttgtgttcaaacatgattgagccatcagaagcaattcaccatcttcaaactcaacatagtgtgcattttcttccc |
16863488 |
T |
|
| Q |
118 |
ataggggacattcattctgatagtgtcccagctcgtgacactta-taacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctg |
216 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||| || || |||| | | |||| |||||||| |||||| |||||||| |||||| |
|
|
| T |
16863487 |
atagaggacattcattttgatagtgtcccagcttgtgacactttgtagcattcaacacttccattgttaattcttcctctaccccttcctctaacacctg |
16863388 |
T |
|
| Q |
217 |
aacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcg |
316 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||||||||| ||||| || ||||||||||||| |||||||||||||||||||| |||| ||| ||||| |
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|
| T |
16863387 |
aacgccctcttcctctaccatatcctacagatcctcttccaccattagatgccttcaaagcttgttcaatatcaatttcttgattttgagttttcatgcg |
16863288 |
T |
|
| Q |
317 |
tcgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttactt |
416 |
Q |
| |
|
| |||||||||||||||| || || |||||||||| || ||| || ||| |||||||| ||||| | ||| ||||||| ||| ||||| || |||||| |
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|
| T |
16863287 |
ttgttcttgaacaagtaaactgctatgaagttcattaattgagagtgtagttacatcatttgattcatgaattgagcacagcacgtaattaaatttactt |
16863188 |
T |
|
| Q |
417 |
gttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc |
479 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
16863187 |
gttaaagatctcagaatcttttcaacaacaagtgtttgatccatcttctcaccatgtgttgtc |
16863125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 20529208 - 20528758
Alignment:
| Q |
18 |
agaaaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttcccc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||| |||| | ||| |
|
|
| T |
20529208 |
agaaaccatacctcatctttgacatttgtgttcaatcatgtttgagccatgagatgaaattcaccatcttcaaattcagcataatttgaatttggttccc |
20529109 |
T |
|
| Q |
118 |
ataggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctga |
217 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||||||| || |||| ||||| |||| |||||||| | || ||||||| | ||| |
|
|
| T |
20529108 |
atagatgacattcattctgatagtgtcctagcttgtgacacttattgcattcaactaaatct-tgttaattcttcctccacatcttcctctttg-cttga |
20529011 |
T |
|
| Q |
218 |
acgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgt |
317 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||| |||||| |
|
|
| T |
20529010 |
acgccctcttcctctcccatatcccacagatcctcttccaccattagaaaccttcaaagcttgctcagtatcagtttcttggttttgagatttcatgcgt |
20528911 |
T |
|
| Q |
318 |
cgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttg |
417 |
Q |
| |
|
|||||||||||||||| ||||| || | ||||| ||| | | || ||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
20528910 |
tgttcttgaacaagtaaactactatgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatcacaccacataattgaacttgcttg |
20528811 |
T |
|
| Q |
418 |
ttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcacca |
470 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
20528810 |
ttaaagatctcaagatcttttcaacaagcagagtttgatccatcttttcacca |
20528758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 40612796 - 40613245
Alignment:
| Q |
18 |
agaaaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttcccc |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| | |||| | || ||||||| | ||| |
|
|
| T |
40612796 |
agaaaccatacctcatctttggcgtttgtgttcaagcaagattgggccataagaagtaattcaccatcttcaaacttagcaaagttagcattttcttccc |
40612895 |
T |
|
| Q |
118 |
ataggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctga |
217 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| || | |||||||| ||||||||| | || ||||||||| |||||||||||||||| |
|
|
| T |
40612896 |
atagaggacactcattctggtagtgtcccaacttgcgacacttaaaacactcaacacttgctttgttgattc------------ttcctctagcacctga |
40612983 |
T |
|
| Q |
218 |
acgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgt |
317 |
Q |
| |
|
||| ||||||||||||||| | |||| | |||||| | ||||| ||||||||||||||||| |||| |||||| |||||||| |||||||| ||| || |
|
|
| T |
40612984 |
acgtcctcttcctctaccataccccacgaaacctctttcaccattggaaaccttcaaagcttgttcaacatcaatgtcttgattttgagatttcatgtgt |
40613083 |
T |
|
| Q |
318 |
cgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttg |
417 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||| || | | || ||| || || || ||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
40613084 |
tgttcttgaacaagtaaactactctgcaactcatcaattgatagtgtagtgacgtcgtttgattcttcaatggaacacaccacataattgaatttacttg |
40613183 |
T |
|
| Q |
418 |
ttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc |
479 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
40613184 |
ttaaagatctcaaaatcttttcaacaaccagcgtttgatccatcttctcaccatgtgttgtc |
40613245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 267 - 474
Target Start/End: Complemental strand, 20542289 - 20542082
Alignment:
| Q |
267 |
accttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcag |
366 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||| | ||||| || | | | || |
|
|
| T |
20542289 |
accttcaaagcttgttcaacatcaaagtcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctgcaactcatcaattgatagcgtag |
20542190 |
T |
|
| Q |
367 |
tcacatcattagattcttcaatagagcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttc |
466 |
Q |
| |
|
| || ||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
20542189 |
tgacgtcatttgattcttcaatggaacacaccacataattgaatttacttgttaaagatctcagaatcttttcaacaaccagcgtttgatccatcttctc |
20542090 |
T |
|
| Q |
467 |
accatgtg |
474 |
Q |
| |
|
|||||||| |
|
|
| T |
20542089 |
accatgtg |
20542082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 20542514 - 20542323
Alignment:
| Q |
18 |
agaaaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttcccc |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| | || ||||||| | ||| |
|
|
| T |
20542514 |
agaaaccatacctcatctttggcgtttgtgttcaagcaagattgagccataagaagtaattcaccatcttcaaactcagcaaagttagcattttcttccc |
20542415 |
T |
|
| Q |
118 |
ataggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctcta |
209 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||||||| ||||||||| | || ||||||||||||| || ||| |||||||| |
|
|
| T |
20542414 |
atagaggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta |
20542323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 447
Target Start/End: Original strand, 23940152 - 23940233
Alignment:
| Q |
365 |
agtcacatcattagattcttcaatagagcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaacca |
447 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||| |||||||||| |||| ||| ||||| | |||||||||||| |||| |
|
|
| T |
23940152 |
agtcacatcatttgattcttcaatggaacacaccacacaattgaacttgcttg-taatgatcttaaaatcttctcaaccacca |
23940233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 29945174 - 29945214
Alignment:
| Q |
369 |
acatcattagattcttcaatagagcacaccacataattgaa |
409 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
29945174 |
acatcatttgattcttcaattgagcacacaacataattgaa |
29945214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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