View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8970_low_18 (Length: 406)
Name: NF8970_low_18
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 340628 - 340923
Alignment:
| Q |
17 |
tactcctccaagatctttacgcggaggcattccaatatgttttcctcaagtacgtgtatc---ttataaagcttgtatgttttggtttattgttttttct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
340628 |
tactcctccaagatctttacgcggaggcattccaatatgttttcctcaagtacgtgtatcatcttatagagcttgtatgtttttgtttattgttttttct |
340727 |
T |
|
| Q |
114 |
ttaagtactttatatt-atccatatgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggaccttagatcctaatcc |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
340728 |
ttaagtactttatatccatccatatgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttgtggatcttagatcctaatcc |
340827 |
T |
|
| Q |
213 |
tcctccctttccaacaaatagcaacagtagagctttcgttgatttggttctcaaaaactctgaagatgatacaaagaattggcctcacaggtattt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
340828 |
tcctccctttccaacaaatagcaacagtagagctttcgttgatttggttctcaaaaactctgaagatgatacaaagaattggcctcacaggtattt |
340923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 340965 - 340998
Alignment:
| Q |
354 |
aagaaccaacatcaaaatgattggtagacatctt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
340965 |
aagaaccaacatcaaaatgattggtagacatctt |
340998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University