View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8970_low_2 (Length: 901)

Name: NF8970_low_2
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8970_low_2
NF8970_low_2
[»] chr4 (5 HSPs)
chr4 (270-901)||(40083734-40084373)
chr4 (12-270)||(40083257-40083518)
chr4 (68-147)||(12826670-12826748)
chr4 (68-187)||(3650375-3650494)
chr4 (68-147)||(50633360-50633438)
[»] chr1 (5 HSPs)
chr1 (62-219)||(47828283-47828441)
chr1 (147-258)||(47828516-47828628)
chr1 (55-187)||(33999902-34000035)
chr1 (147-219)||(47828442-47828515)
chr1 (54-152)||(22891625-22891724)
[»] chr7 (5 HSPs)
chr7 (61-157)||(7680754-7680850)
chr7 (54-152)||(40702667-40702765)
chr7 (63-140)||(19689789-19689866)
chr7 (68-184)||(20965368-20965484)
chr7 (60-128)||(5896179-5896247)
[»] chr8 (3 HSPs)
chr8 (60-186)||(30732301-30732427)
chr8 (60-147)||(16594222-16594308)
chr8 (55-147)||(6623263-6623354)
[»] chr5 (6 HSPs)
chr5 (68-186)||(1705298-1705415)
chr5 (63-128)||(40079537-40079602)
chr5 (55-187)||(6452069-6452201)
chr5 (68-184)||(31649595-31649711)
chr5 (54-187)||(12447626-12447759)
chr5 (55-128)||(13760563-13760635)
[»] chr2 (3 HSPs)
chr2 (54-128)||(6042066-6042140)
chr2 (55-114)||(32984001-32984060)
chr2 (606-700)||(31858245-31858341)
[»] chr3 (3 HSPs)
chr3 (55-111)||(46279532-46279588)
chr3 (55-147)||(27395287-27395378)
chr3 (611-678)||(50324794-50324861)
[»] scaffold0470 (1 HSPs)
scaffold0470 (55-147)||(12687-12778)
[»] chr6 (1 HSPs)
chr6 (60-141)||(32548834-32548915)


Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 270 - 901
Target Start/End: Original strand, 40083734 - 40084373
Alignment:
Q  270 agtatggttatgatgccaaatatttaaactccctttaatcaacaccactcaattgaaattaggggttttaaaatcacacaattttaaaattaggggttca 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40083734 agtatggttatgatgccaaatatttaaactccctttaatcaacaccactcaattgaaattaggggttttaaaatcacacaattttaaaattagggggtca 40083833  T
Q  370 aagtgtaattaagacattttttaaagtaactcaatgccattttacaatagggttttgtcaacttgtacctctaaaagtacatcttaaagaactcaagagt 469  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40083834 aagtgtaattaagacatttttaaaagtaactcaatgccattttacaatagagttttgttaacttgtacctctaaaagtacatcttaaagaactcaagagt 40083933  T
Q  470 agaaaccttacattcaacatagtagtttttgtactttagagaaattgattacaagcagagagagtaac------tagtttcttattatgctcttaagaca 563  Q
    ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||      |||||| ||| |||||||||||||||    
T  40083934 agaaatcttacattgaacaaagtagtttttgtactttagagaaattgattacaagcggagagagtaactatatgtagtttgttagtatgctcttaagaca 40084033  T
Q  564 tgtgaatatttttctttacaataaaagacatccatgttttaaatgtggattctctccggcctttttggttcggccatatctcatttttcaattcaacggt 663  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  40084034 tgtgaatatttttttttacaataaaagacaaccatgttttaaatgtggattctctccggcccttttggttcaaccatatctcatttttcaattcaacggt 40084133  T
Q  664 tgattaatacatgaacgacaagaataataaaga--agagnnnnnnnnnnnnngttagtaaatggtttagatt-aaacatgatgaacaacatgagagaatg 760  Q
    ||||| |||||||||||||||||||||||||||  ||||             |||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  40084134 tgattgatacatgaacgacaagaataataaagaagagagaaagaaaaaaaaagttagtaattggttgagattaaaacatgatgaacaacatgagagaatg 40084233  T
Q  761 aacaacattaggggatccaaatccccatgttttaggtacgacattcgtcatcacttgatttaaaaatactattactatcatttattaagaaaggctttgc 860  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40084234 aacaacattaggggatccaaat-cccatgttttaggtacgacgttcgtcatcacttaatttaaaaatactattactatcatttattaagaaaggctttgc 40084332  T
Q  861 cagcttttgcaataaaatcaaccatgttaattgcttgcttt 901  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40084333 cagcttttgcaataaaatcaaccatgttaattgcttgcttt 40084373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 40083257 - 40083518
Alignment:
Q  12 catcaaaaacatgtttaatcataaaataaaataggggaatgggcaggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| |||||||||| |||||    
T  40083257 catcaaaaacatgtttaatcataaaataaaataggggaatgggcaggagcggatttaccacccagctagcccgggcacccgcccgggctcaacctctact 40083356  T
Q  112 caggggcggatctctttgaggacctatggaagccatgacatttccatgtttgc--tatatatatcacattgggcat-aatgttcaatatattccctcggt 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||| ||||||||||||||||||| |||    
T  40083357 caggggcggatctctttgaggacctatggaagccatgtcatttccatgtttgctatatatatatcatattgggcataaatgttcaatatattcccttggt 40083456  T
Q  209 tgcagtggtatggcgaccatactttcagtgtaaagtctctagttcgactcatggcgcctcta 270  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  40083457 tgcagtggtatggcgaccatactttcattgtgaagtctctagttcgactcatggcgcctcta 40083518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 12826670 - 12826748
Alignment:
Q  68 accacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccat 147  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||| || |||||||||||| |||||||||| ||||||    
T  12826670 accacccagctagcctgggcacgcgcccgggctcaaccgatactca-ggacggatctctttggggacctatgggagccat 12826748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 3650375 - 3650494
Alignment:
Q  68 accacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatttc-catgtttgcta 166  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||| || |||||||||||| ||| ||| || ||||||  |||| | || | ||||||    
T  3650375 accacccagctagcctgggcacgcgcccgggctcaaccgatactca-ggacggatctctttggggatctaagggagccataccattcctcaagcttgcta 3650473  T
Q  167 tatatatcacattgggcataa 187  Q
    ||||||| | |||||||||||    
T  3650474 tatatattatattgggcataa 3650494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 50633438 - 50633360
Alignment:
Q  68 accacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccat 147  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||| || |||||||||||| ||| |||||| ||||||    
T  50633438 accacccagctagcctgggcacgcgcccgggctcaaccggtactca-ggacggatctctttggggatctatgggagccat 50633360  T

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Target: chr1 (Bit Score: 127; Significance: 4e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 47828283 - 47828441
Alignment:
Q  62 ggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatttccatgtt 161  Q
    |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  47828283 ggatttaccacccagctagcatgggcacacacccgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatggcatttccaagtt 47828382  T
Q  162 tgctatatatatcacattgggcat-aatgttcaatatattccctcggttgcagtggtat 219  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  47828383 tgctatatatatcatattgggcataaatgttcaatatattccctcggttgcagtggtat 47828441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 47828516 - 47828628
Alignment:
Q  147 tgacatttccatgtttgctatatatatcacattgggcataa-tgttcaatatattccctcggttgcagtggtatggcgaccatactttcagtgtaaagtc 245  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||  | |||||    
T  47828516 tgacatttccaagtttgctatatatatcatattgggcataaatgttcaatatattccctcggttgcagtggtatggcgaccatacctttagcttgaagtc 47828615  T
Q  246 tctagttcgactc 258  Q
    |||||||| ||||    
T  47828616 tctagttcaactc 47828628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 33999902 - 34000035
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacat-t 153  Q
    |||| |||||||||||||||| ||||| |||||||||||| ||||||||||| | |||||||||||||||||||| | | |||||| || |||| |||      
T  33999902 caggggcggatttaccacccaactagcctgggcacgcgcccgggctcaacccatgctcaggggcggatctctttgggaatctatgggagtcatgtcatcc 34000001  T
Q  154 tccatgtttgctatatatatcacattgggcataa 187  Q
     ||||| ||||||||||||| | |||||||||||    
T  34000002 cccatggttgctatatatattatattgggcataa 34000035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 47828442 - 47828515
Alignment:
Q  147 tgacatttccatgtttgctatatatatcacattgggcataa-tgttcaatatattccctcggttgcagtggtat 219  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  47828442 tgacatttccaagtttgctatatatatcatattgggcataaatgttcaatatattccctcggttgcagtggtat 47828515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 22891625 - 22891724
Alignment:
Q  54 gcaggagcggatttaccacccagctagcatgggcacgc-gcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacat 152  Q
    ||||| |||||||||||||||||||||| ||||||| | |||| |||||||||| |||| ||| ||||||||| ||| |||||||||  |||||||||||    
T  22891625 gcaggggcggatttaccacccagctagcctgggcacacagcctaggctcaacccatactaaggagcggatctccttggggacctatgagagccatgacat 22891724  T

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Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 7680850 - 7680754
Alignment:
Q  61 cggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatttcca 157  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  7680850 cggatttaccacccagctagcttgggcacgcgcccgggctcaacccctactcagggacggatctctttgaggacctatggaagccatgacacttcca 7680754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 40702667 - 40702765
Alignment:
Q  54 gcaggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacat 152  Q
    ||||| |||||||||||||||||||||| ||||||| |||| |||||||||||  ||||||||||||||||| ||  |||||||||  |||||||||||    
T  40702667 gcaggggcggatttaccacccagctagcctgggcacacgcccgggctcaacccacactcaggggcggatctccttagggacctatgagagccatgacat 40702765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 19689866 - 19689789
Alignment:
Q  63 gatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatgg 140  Q
    ||||||||||||||||||| ||||||| ||||  |||||||||| |||||||||||||||||| ||| ||||||||||    
T  19689866 gatttaccacccagctagcctgggcacacgcccaggctcaacccatactcaggggcggatctccttgtggacctatgg 19689789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 20965368 - 20965484
Alignment:
Q  68 accacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatttc-catgtttgcta 166  Q
    |||||||||||||| | |||||||||| ||||||||||  |||||| || |||||||||||| |||||||||| ||||||  |||| | || | ||||||    
T  20965368 accacccagctagcctaggcacgcgcccgggctcaaccgatactca-ggacggatctctttggggacctatgggagccataccattcctcaaggttgcta 20965466  T
Q  167 tatatatcacattgggca 184  Q
    ||||||||| ||||||||    
T  20965467 tatatatcatattgggca 20965484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 5896247 - 5896179
Alignment:
Q  60 gcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctcttt 128  Q
    |||| ||||||||||| ||||| ||||||| | ||| || ||||||| ||||||| |||||||||||||    
T  5896247 gcggttttaccacccaactagcttgggcacacacctaggttcaacccatactcagcggcggatctcttt 5896179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 30732427 - 30732301
Alignment:
Q  60 gcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacat-ttccat 158  Q
    ||||||| |||||||||||||| |||||||||| | ||||||||||| |||||| ||||||||||||||| ||| |||||||||||||  |||  ||||     
T  30732427 gcggattcaccacccagctagcctgggcacgcgtccgggctcaacccatactca-gggcggatctctttggggatctatggaagccataccatcctccaa 30732329  T
Q  159 gtttgctatatatatcacattgggcata 186  Q
    | ||||||||||||||||||||||||||    
T  30732328 ggttgctatatatatcacattgggcata 30732301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 16594222 - 16594308
Alignment:
Q  60 gcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccat 147  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||  |||| | || |||||||||||| |||||||||| ||||||    
T  16594222 gcggttttaccacccagctagcctgagcacgcgcccgggctcaaccgatactta-ggacggatctctttggggacctatgggagccat 16594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 6623263 - 6623354
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccat 147  Q
    |||| |||| || |||||||||||| | |||||||||||| ||||||||||  |||||| || ||||||| |||| ||| |||||| ||||||    
T  6623263 caggggcggtttcaccacccagctaacctgggcacgcgcccgggctcaaccgatactca-ggacggatctttttggggatctatgggagccat 6623354  T

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Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 1705415 - 1705298
Alignment:
Q  68 accacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatttccatgtttgctat 167  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||||  |||||||||||||| ||| |||||||||||||  |   |||| | |||||||    
T  1705415 accacccagctagcctgggcacgcgcccgggctcaacccatactca-aggcggatctctttggggatctatggaagccatacctcctccaaggttgctat 1705317  T
Q  168 atatatcacattgggcata 186  Q
    |||||||| ||||||||||    
T  1705316 atatatcatattgggcata 1705298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 40079537 - 40079602
Alignment:
Q  63 gatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctcttt 128  Q
    ||||||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||||||    
T  40079537 gatttaccacccagctagcctgggcacgcgcccgggctctatccatactcaggggcggatctcttt 40079602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 6452201 - 6452069
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacattt 154  Q
    |||| |||| || |||| ||||||||| |||||||||||| ||||||||||  |||||| || |||||||||||| ||| |||||| ||||||  ||||     
T  6452201 caggggcggtttcaccatccagctagcctgggcacgcgcccgggctcaaccgatactca-ggacggatctctttggggatctatgggagccataccattc 6452103  T
Q  155 c-catgtttgctatatatatcacattgggcataa 187  Q
    | || | ||| ||||||||| | |||||||||||    
T  6452102 ctcaaggttgttatatatattatattgggcataa 6452069  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 31649711 - 31649595
Alignment:
Q  68 accacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatttc-catgtttgcta 166  Q
    |||||||||||||| ||||||||||||  |||||||||  |||||| || |||||||||||| | |||||||| ||||||  |||| | ||   ||||||    
T  31649711 accacccagctagcctgggcacgcgcccaggctcaaccgatactca-ggacggatctctttgggaacctatgggagccataccattcctcaaacttgcta 31649613  T
Q  167 tatatatcacattgggca 184  Q
    ||||||||| ||||||||    
T  31649612 tatatatcatattgggca 31649595  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 12447626 - 12447759
Alignment:
Q  54 gcaggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccatgacatt 153  Q
    ||||| |||| || ||||||||| |||| | |||||| ||  ||||||||||  ||||||||  |||||||||||| ||| |||||| ||||||  ||||    
T  12447626 gcaggggcggtttcaccacccagttagccttggcacgtgctcgggctcaaccgatactcagga-cggatctctttggggatctatgggagccataccatt 12447724  T
Q  154 tc-catgtttgctatatatatcacattgggcataa 187  Q
     | || | ||||||||||||| | |||||||||||    
T  12447725 cctcaaggttgctatatatattatattgggcataa 12447759  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 13760635 - 13760563
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctcttt 128  Q
    |||| ||||||| |||||||| ||||| |||||||||||| | ||||||||  |||||| || |||||||||||    
T  13760635 caggggcggattcaccacccaactagcctgggcacgcgcccgagctcaaccaatactca-ggacggatctcttt 13760563  T

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Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 6042066 - 6042140
Alignment:
Q  54 gcaggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctcttt 128  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||    
T  6042066 gcaggggcggatttaccacccagctagcctgggcacgcgcccgggctctacccatactcaggggcggatctcttt 6042140  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 32984060 - 32984001
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcag 114  Q
    |||| ||||||||||||||||| |||| ||||||||| || ||| ||||||| |||||||    
T  32984060 caggggcggatttaccacccagttagcttgggcacgctcccgggttcaacccatactcag 32984001  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 700
Target Start/End: Original strand, 31858245 - 31858341
Alignment:
Q  606 atgtggattctctccggcctttttggttcggccatatctcatttttcaattcaacggttgattaatacatgaa--cgacaagaataataaagaagag 700  Q
    |||||||| |||||| ||||||||||||| ||| | |||| |||||||||  |||  |||||| |||||||||  | | || |||||||||||||||    
T  31858245 atgtggatcctctccagcctttttggttcagccttctctcctttttcaatctaacaattgattgatacatgaaggcaaaaataataataaagaagag 31858341  T

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Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 46279588 - 46279532
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctact 111  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  46279588 caggggcggatttaccacccagctagcctgggcacgcgcctgggctcaacccatact 46279532  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 27395287 - 27395378
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccat 147  Q
    |||| ||||||| ||||||| |||||| |||||| ||||| ||||||||||  ||||| ||| ||||||||||||  ||||||||| ||||||    
T  27395287 caggggcggattcaccaccccgctagcctgggcatgcgcccgggctcaaccaatactctggg-cggatctctttggagacctatgggagccat 27395378  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 50324794 - 50324861
Alignment:
Q  611 gattctctccggcctttttggttcggccatatctcatttttcaattcaacggttgattaatacatgaa 678  Q
    |||||||||| ||||||||||||| | ||| |||| |||| ||| |||| |||||||| |||||||||    
T  50324794 gattctctcctgcctttttggttcagacatctctccttttccaaatcaatggttgattgatacatgaa 50324861  T

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Target: scaffold0470 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 12687 - 12778
Alignment:
Q  55 caggagcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatggaagccat 147  Q
    |||| |||| || |||||||||||| | |||||||||||| ||||||||||  |||||| || ||||||| |||| ||| |||||| ||||||    
T  12687 caggggcggtttcaccacccagctaacctgggcacgcgcccgggctcaaccgatactca-ggacggatctttttggggatctatgggagccat 12778  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 32548915 - 32548834
Alignment:
Q  60 gcggatttaccacccagctagcatgggcacgcgcctgggctcaacccctactcaggggcggatctctttgaggacctatgga 141  Q
    ||||||||||| |||||||||| |||||| | ||| |||||| |||| |||| || |||  ||||||||  |||||||||||    
T  32548915 gcggatttaccgcccagctagcttgggcatgtgcccgggctctacccatacttagaggcatatctctttagggacctatgga 32548834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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