View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8970_low_23 (Length: 380)
Name: NF8970_low_23
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 24451148 - 24451059
Alignment:
| Q |
17 |
catcaatttaagttaatcaacacaaagaataaactgctctaggaaaactgctagctaaaacttaaaagaacacgtcaaagaattggcaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
24451148 |
catcaatttaagttaatcaacacaaagaataaactgcactagcaaaactgctagctaaaacttaaaagaacacatcaaataattggcaca |
24451059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 55819264 - 55819292
Alignment:
| Q |
334 |
tcttttttcaatttgataacctaaatcac |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
55819264 |
tcttttttcaatttgataacctaaatcac |
55819292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 1069111 - 1069083
Alignment:
| Q |
334 |
tcttttttcaatttgataacctaaatcac |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1069111 |
tcttttttcaatttgataacctaaatcac |
1069083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University