View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_low_24 (Length: 378)
Name: NF8970_low_24
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 30457286 - 30456945
Alignment:
| Q |
19 |
ggttttttgctgagatgatcaggaatgagtggttgcccacaacttctaattgtgctgtagccattgaaatgatgtttaattatgatgaccctgatgcagc |
118 |
Q |
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| T |
30457286 |
ggttttttgctgagatgatcaagaatgagtggttgcccacaacttctaattgtgctgtagccattgaaatgttgtttaattgtgatgaccctgatgcagc |
30457187 |
T |
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| Q |
119 |
acttgagatttggagttacatggttgaaactcgcgttagggtgcttgatgtgagtgcgaacatggtgcttattggactttgcaaattgaaaagactgtca |
218 |
Q |
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| T |
30457186 |
acttgagatttggagttacatggttgaaactcgtgttagggtgcttgatgtgagtgcgaacatggtgcttattggtctttgcaaattgaaaagactgtca |
30457087 |
T |
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| Q |
219 |
gaggatagaaggtttgctgaagaaatgcttgataaaaggatctccatatatgattctacaatgaacaagttgaaggaagcattctacaaagagagtagaa |
318 |
Q |
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| T |
30457086 |
gaggttagaaggtttgctgaagaaatgcttgataaaaggatctccatatatgattctacaatgaacaagttgaaggaagcattctacaaagagagtagaa |
30456987 |
T |
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| Q |
319 |
gttcaagtgcaagagacaaatttgatgctatttacaggagat |
360 |
Q |
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| T |
30456986 |
gttcaagtgcaagagacaaatttgatgctatttacaggagat |
30456945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 1388968 - 1388893
Alignment:
| Q |
118 |
cacttgagatttggagttacatggttgaaactcgcgttagggtgcttgatgtgagtgcgaacatggtgcttattgg |
193 |
Q |
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| T |
1388968 |
cacttgatatttggagttacatggctgaaactcgtgttgaggtgtttgatgtgagtgcaaatatgttgctcattgg |
1388893 |
T |
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