View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_low_26 (Length: 340)
Name: NF8970_low_26
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 26066877 - 26066550
Alignment:
| Q |
17 |
cacagatcttcaagatgagttaattatgttttttcctggtgtttaatgagtggaggcctctagggtggataaccaaaacaagaaactagatggtgtgcta |
116 |
Q |
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| T |
26066877 |
cacagatcttcaagatgagttaattatgttttttcctggtgtttaatgagtggaggcctctagggtggataaccaaaacaagaaactagatggtgtgcta |
26066778 |
T |
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| Q |
117 |
ttttcaataattatttaaactttgtatgacttctgaatcaacataaaactatgtttgcattataactactgtattttggaggttttaaatttgttaaagg |
216 |
Q |
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| T |
26066777 |
ttttcaataattatttaaactttgtatgacttctgaaacaacataaaactatgtttgcattataactactgcgttttggtggttttaaatttgttaaagg |
26066678 |
T |
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| Q |
217 |
cataattttgccttttttatgatagtttaatgacaat-----tttatacctatgtataatcccttatgcatgaagaattttgaatagctaatatcattgc |
311 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
26066677 |
cataattttgccttttttatgatagtttaatgaaaattttaatttatacctat-tataatcccttatgcatgaagaattttgaataattaaaatcattgc |
26066579 |
T |
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| Q |
312 |
aacaggtgcatgtatatgacacttcgtgg |
340 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
26066578 |
aacatttgcatgtatatgacacttcgtgg |
26066550 |
T |
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