View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8970_low_3 (Length: 884)
Name: NF8970_low_3
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_3 |
 | |
|
| [»] scaffold1155 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 2 - 646
Target Start/End: Complemental strand, 21833441 - 21832797
Alignment:
| Q |
2 |
aagaatgtacttttcactatataaggggtagctaacgtcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaatta |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21833441 |
aagaatgtacttttgactatataaggggtagctaacgtcgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaatta |
21833342 |
T |
|
| Q |
102 |
gcaattctggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtg |
201 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21833341 |
gcaattttggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtg |
21833242 |
T |
|
| Q |
202 |
acttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
21833241 |
acttgatgttcaatgatgggaaacgagagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatct |
21833142 |
T |
|
| Q |
302 |
tttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggag |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21833141 |
tttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggag |
21833042 |
T |
|
| Q |
402 |
agaggatacaagtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatatgaatgtgttg |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21833041 |
agaggatacaagtagcgacgattgttgtcgtcctcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatttgaatgtgttg |
21832942 |
T |
|
| Q |
502 |
ttgtaaccatggttttgcgaagtcgtgaaaactgtagaaactgtgaacacaaaaagacggtaacgttggtgcaaaaatggtgctggcggtgacacaaaaa |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21832941 |
ttgtaaccatggttttgcgaagtcgtgaaaactgcagaaaccgtgaacacaaaaagacggtaacgttagtgcaaaaatggtgctggcggtgacacaaaaa |
21832842 |
T |
|
| Q |
602 |
tattagggtttggagttaggttatgtttttattgttacgggtttg |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21832841 |
tattagggtttggagttaggttatgtttttattgttacgggtttg |
21832797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 652 - 747
Target Start/End: Complemental strand, 21832497 - 21832402
Alignment:
| Q |
652 |
ggtaacggatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
747 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21832497 |
ggtaacagatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
21832402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 803 - 865
Target Start/End: Complemental strand, 21832347 - 21832285
Alignment:
| Q |
803 |
acataaaattcaacttcattcaattaggaaatggattatcggcaacacttatttctccacact |
865 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21832347 |
acataaaattcaacttcattcaattgggaaatggattatcggcaacacttatttctccacact |
21832285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 553759 - 553865
Alignment:
| Q |
110 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg |
209 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||| | ||| |||||||||||| |||||||||||||||||| | ||||| || |||||| ||| | |
|
|
| T |
553759 |
ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgagg |
553858 |
T |
|
| Q |
210 |
ttcaatg |
216 |
Q |
| |
|
||||||| |
|
|
| T |
553859 |
ttcaatg |
553865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 7225293 - 7225125
Alignment:
| Q |
33 |
ctaacgtcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaag |
132 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||||||||||| ||||||| || ||| | | || | ||||||| | |||||||||||||| |
|
|
| T |
7225293 |
ctaaggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgaca-gaataaatgtggaacatgtgagagaggtcaaag |
7225195 |
T |
|
| Q |
133 |
tagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
202 |
Q |
| |
|
| |||| ||||| | || | || |||||||| ||| |||||| ||| ||| || |||||||| ||||| |
|
|
| T |
7225194 |
ttgtaatattttgagaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaagtga |
7225125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 8186486 - 8186323
Alignment:
| Q |
39 |
tcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaa |
138 |
Q |
| |
|
||||||||||| || || || ||||| || |||||||||| | ||||||| |||||| | |||| ||||||| | ||| ||||||||||| |||| |
|
|
| T |
8186486 |
tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa |
8186387 |
T |
|
| Q |
139 |
agttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
202 |
Q |
| |
|
||| | | | ||||||||| |||| ||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
8186386 |
tatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga |
8186323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 42 - 420
Target Start/End: Original strand, 10615645 - 10616023
Alignment:
| Q |
42 |
agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt |
141 |
Q |
| |
|
||||||||||| || ||||||||||| | || |||||||| ||| | ||||||| ||||| || |||||||| ||||||||||||||| |||| | |
|
|
| T |
10615645 |
agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct |
10615744 |
T |
|
| Q |
142 |
tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag |
241 |
Q |
| |
|
|||| | ||| |||| ||||||| |||||||| ||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10615745 |
tttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggag |
10615844 |
T |
|
| Q |
242 |
aaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgagg |
341 |
Q |
| |
|
||| ||| ||||||||||||||||| | |||||| ||||| |||| || ||||| ||||| |||||| | | | || ||||||||||||||||| | |
|
|
| T |
10615845 |
aagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagaggaggcaaaggaaagggcgtgttggattgaag |
10615944 |
T |
|
| Q |
342 |
acagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgac |
420 |
Q |
| |
|
| ||| ||||| || || | | | | |||||||||||| ||| ||||||||| |||||||| || ||||||||||| |
|
|
| T |
10615945 |
atagtgagtgagaaccggatccggttggtgatggagaggagttgcttggagacaagggagagagaattcaagtagcgac |
10616023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 10169175 - 10169037
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| || |||| |||||| ||||| |||| | |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
10169175 |
gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata |
10169076 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtg |
179 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
10169075 |
ttttgagagaaaactcgcaacccatttgcgggaatggtg |
10169037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 10176700 - 10176562
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| || |||| |||||| ||||| |||| | |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
10176700 |
gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata |
10176601 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtg |
179 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
10176600 |
ttttgagagaaaactcgcaacccatttgcgggaatggtg |
10176562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 19467556 - 19467398
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||| |||| |
|
|
| T |
19467556 |
gagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttgtaata |
19467457 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgag |
199 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| || ||||||||||| |||| |
|
|
| T |
19467456 |
ttttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgag |
19467398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 7555129 - 7555283
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||| |||| |||| || |||||| | | | ||| ||||||||| ||| ||||| ||||| |||| |
|
|
| T |
7555129 |
gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaata |
7555228 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatat |
195 |
Q |
| |
|
||||| | ||| ||||||| ||| ||| || |||||||||| |||||| |||| |
|
|
| T |
7555229 |
ttttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaatat |
7555283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 110 - 417
Target Start/End: Original strand, 6417092 - 6417399
Alignment:
| Q |
110 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg |
209 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||| | ||| |||| ||||||| | |||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
6417092 |
ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatgtgatg |
6417191 |
T |
|
| Q |
210 |
ttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaaga |
309 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| || ||||| || || ||||| | |||||| ||||| |||| || ||||| ||||| |||| |
|
|
| T |
6417192 |
ttcaatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaaga |
6417291 |
T |
|
| Q |
310 |
ggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggata |
409 |
Q |
| |
|
|| ||| | || |||||||||||||||||||| |||||||| ||||||| | | | |||||||||||| ||| ||||||||| ||||||| || |
|
|
| T |
6417292 |
ggcgacaaaggaaagggcgtgttggattgaggatagtcagtgtgaatcgaattcggttggtgatggagaggagttgcttggagacaagggagagaaaatt |
6417391 |
T |
|
| Q |
410 |
caagtagc |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
6417392 |
caagtagc |
6417399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 303
Target Start/End: Complemental strand, 7993606 - 7993412
Alignment:
| Q |
109 |
tggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgat |
208 |
Q |
| |
|
|||||||| ||||||||||||| | |||| |||||| ||||| ||||||| |||| ||||||| | || || || ||||||||| || || |||| |
|
|
| T |
7993606 |
tggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgat |
7993507 |
T |
|
| Q |
209 |
gttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttt |
303 |
Q |
| |
|
|||||||||||||||| |||||||| || |||| ||||| ||||||| ||| || |||||||| |||||| |||| || ||||| |||| |
|
|
| T |
7993506 |
gttcaatgatgggaaagtagagatttcccgcagaaacttgtcaaggtcacaatggtagttcgagaggttgagggagttaaggttagtgaatcttt |
7993412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 6588248 - 6588179
Alignment:
| Q |
188 |
ggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtca |
257 |
Q |
| |
|
||||| ||||||||| |||| ||||||| |||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
6588248 |
ggagagattgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtca |
6588179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 6433175 - 6433220
Alignment:
| Q |
446 |
gaatttgaagatgcatttccaacagtcatcaggtaagtatgaatat |
491 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
6433175 |
gaatctgaagatgcattcccaacagtcatcaggtaaatttgaatat |
6433220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 42 - 352
Target Start/End: Complemental strand, 13469773 - 13469463
Alignment:
| Q |
42 |
agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt |
141 |
Q |
| |
|
|||||||| ||||| || |||||||| | || |||||||||||| || |||||||||||||||| |||||||| ||||||||||| || ||| | |
|
|
| T |
13469773 |
agttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgtattct |
13469674 |
T |
|
| Q |
142 |
tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag |
241 |
Q |
| |
|
|||| | ||| |||| ||||||| ||| |||| ||||||| |||||||| ||| ||||| ||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
13469673 |
tttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtgatgtgatgttcaatgatgagaagcgagagattttgcggag |
13469574 |
T |
|
| Q |
242 |
aaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgagg |
341 |
Q |
| |
|
||| ||| ||||| || |||||||| | |||||| || || |||| || ||||| ||||| |||||| ||| | || |||| |||||||||||||| |
|
|
| T |
13469573 |
aagagcgtcaaggtccccatggaagcgtgtgaggttgagtgaattaaggtttgtgaatcttttaaagaggcgacaaaggaaagggtgtgttggattgagg |
13469474 |
T |
|
| Q |
342 |
acagtcagtga |
352 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
13469473 |
atagtgagtga |
13469463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 51763446 - 51763391
Alignment:
| Q |
110 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccat |
165 |
Q |
| |
|
|||||||| |||||| |||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
51763446 |
ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccat |
51763391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 150 - 302
Target Start/End: Complemental strand, 1902 - 1753
Alignment:
| Q |
150 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| || || |
|
|
| T |
1902 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt |
1806 |
T |
|
| Q |
250 |
cgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctt |
302 |
Q |
| |
|
|||||||| || | | | |||||||||||||||||||| || ||||||||| |
|
|
| T |
1805 |
tgaggtcactgttgtaacacgagaggttaagggaggtaaggtttgtgaacctt |
1753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 150 - 302
Target Start/End: Original strand, 8314 - 8463
Alignment:
| Q |
150 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| || || |
|
|
| T |
8314 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt |
8410 |
T |
|
| Q |
250 |
cgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctt |
302 |
Q |
| |
|
|||||||| || | | | |||||||||||||||||||| || ||||||||| |
|
|
| T |
8411 |
tgaggtcactgttgtaacacgagaggttaagggaggtaaggtttgtgaacctt |
8463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 150 - 302
Target Start/End: Complemental strand, 30665 - 30516
Alignment:
| Q |
150 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| || || |
|
|
| T |
30665 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt |
30569 |
T |
|
| Q |
250 |
cgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctt |
302 |
Q |
| |
|
|||||||| || | | | |||||||||||||||||||| || ||||||||| |
|
|
| T |
30568 |
tgaggtcactgttgtaacacgagaggttaagggaggtaaggtttgtgaacctt |
30516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 455
Target Start/End: Complemental strand, 45055858 - 45055773
Alignment:
| Q |
370 |
tgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaag |
455 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | |||||| ||| |||||||| || ||| ||||||| |||||||||| |
|
|
| T |
45055858 |
tgatggagaggaagtgtttggagacgagggagagagactctaagtagggactattgttgttgtagtcatcgatgaggaatttgaag |
45055773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 28532997 - 28533138
Alignment:
| Q |
288 |
agattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtt |
387 |
Q |
| |
|
|||| ||||||||||||||||||| | | | || |||| |||||||||||| || ||| ||||| ||||| || | || ||||||||||||| ||| |
|
|
| T |
28532997 |
agatgggtgaaccttttgaagaggctaagtaggaaagggggtgttggattgacgagagtgagtgagaatcggaggcgtccggtgatggagaggaaccgtt |
28533096 |
T |
|
| Q |
388 |
tggagacagcggagagaggatacaagtagcgacgattgttgt |
429 |
Q |
| |
|
|||| || | |||||||| | ||||| |||||| ||||||| |
|
|
| T |
28533097 |
tggatacggtggagagagaactcaagttgcgacggttgttgt |
28533138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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