View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_low_4 (Length: 704)
Name: NF8970_low_4
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 25 - 704
Target Start/End: Original strand, 37788819 - 37789505
Alignment:
| Q |
25 |
ttcgggagatgtttttaccggttcttaaaaagaacatgagatcgtgcagtagattaactaggccaaatttgnnnnnnnnnctttctgttatgcaggaagg |
124 |
Q |
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| T |
37788819 |
ttcgggagatgtttttaccggttcttaaaaataacatgagatcgtgcagtagattaactaggccaaattcgtttttttttctttctgttatgcaggaagg |
37788918 |
T |
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| Q |
125 |
aaagaccaaagattactcggaatgtgctttctctagcatttctatgcggattgtttgggtatgcaactattcttcaacttttcattcatcg----atatg |
220 |
Q |
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| T |
37788919 |
aaagaccaaagattactcggaatgtgctttctctggcatttctatgcggattgtttgggtatgcaactattcttcaacttttcatgcatcgatcgatatg |
37789018 |
T |
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| Q |
221 |
ttttacatatgaaggaaccaacaacaacagctgtataagatccttccttcatataagaagcaaccactatctaggaatttaaatgagcaacaaagaccta |
320 |
Q |
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| T |
37789019 |
ttttacatatgaaggaaccaacaacaacagctgtataagatccttccttcatataagaagcaaccactatctaggaatttaaatgagcaacaaagaccta |
37789118 |
T |
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| Q |
321 |
aatgtttttctttaatttgcaagtattgtcaacgagcatgttgttccttaattgaatgacatgtcatgcatctaaaatggtggaatggtggagtgacaaa |
420 |
Q |
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| T |
37789119 |
aatgtttttctttaatttgcaagtattgtcaacgagcatgttgttccttaattgaatgacatgtcatgcatctaaaatggtggaatggtggagtgacaaa |
37789218 |
T |
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| Q |
421 |
ctagataaaatccatgttttttaatgtttagatgaaggttcaattcgtcatcaaagtaatccggtttatttttcttagagattaataattgtgcgttctg |
520 |
Q |
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| T |
37789219 |
ctagataaaatccatgttttttaatgtttagatgaaggttcaattcgtcattaaagtaatccggtttatttttcttagagattaataattgtgcgttctg |
37789318 |
T |
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| Q |
521 |
cttagataaaaacaacggagc-----tttcttttccaagggatcaaagtgaaccccattttttcatcgactagaatgtattttcactcttaatttgtcat |
615 |
Q |
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| T |
37789319 |
cttagataaaaacaacctagctttaatttcttttttaagggatcaaagtgaaccc--tattttcatcgactagaatgtattttcactcttaatttgtcat |
37789416 |
T |
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| Q |
616 |
gtattatttcaggggaagtttatttatgaatatgtttgccgaaggcatgactttaacctcatcaacatttatgttcgcaatgttcaacc |
704 |
Q |
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| T |
37789417 |
gtattattccaggggaagtttatttatgaatatgtttgccgaaggcatgactttaacctcatcaacatttatgttcgctatgttcaacc |
37789505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 704
Target Start/End: Original strand, 37798219 - 37798312
Alignment:
| Q |
611 |
gtcatgtattatttcaggggaagtttatttatgaatatgtttgccgaaggcatgactttaacctcatcaacatttatgttcgcaatgttcaacc |
704 |
Q |
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| T |
37798219 |
gtcacgtaatatttcaggggaagtttatttataaacctttatgccgagggtattgctttaacctcagcaacatttatgctagctatgttcaacc |
37798312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 37807340 - 37807398
Alignment:
| Q |
127 |
agaccaaagattactcggaatgtgctttctctagcatttctatgcggattgtttgggta |
185 |
Q |
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| T |
37807340 |
agaccaaagattacttggaaggttctttttctttcatttctatgtggattgtttgggta |
37807398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 37797136 - 37797209
Alignment:
| Q |
113 |
tatgcaggaaggaaagaccaaagattactcggaatgtgctttctctagcatttctatgcggattgtttgggtat |
186 |
Q |
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| T |
37797136 |
tatgcaggaggaaaagaccaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtat |
37797209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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