View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_low_6 (Length: 603)
Name: NF8970_low_6
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 15 - 585
Target Start/End: Complemental strand, 33557207 - 33556644
Alignment:
| Q |
15 |
gtgttaaaagtcaaaaacatacaattatattactattagaagagtggttaaatcttacacaactccacaaaattaatttgtgaggcaaagatggccttca |
114 |
Q |
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| T |
33557207 |
gtgttaagattcgaaaacatacaattatattactattagaagagtggttaaatcttacacaactccacaaagttaatttgtgaggtaaggatggccttca |
33557108 |
T |
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| Q |
115 |
tttataaataaattgacatataatctcttatctaaaatggatttctttaacaattgcggccaattcattattaattttgtcttctatttatttatttatt |
214 |
Q |
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| T |
33557107 |
tttataaataaattgacatataatctcttatctaaaatggatttctttaacaattgcggccaattcattattaattttgtcttctatttatttatttttt |
33557008 |
T |
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| Q |
215 |
gttnnnnnnngacttcctcatgattttgatagaaaaatataatcgtgtcgtttgattcatgtaatcaacctcgccttcccctttgtttcctctataaata |
314 |
Q |
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| T |
33557007 |
gttaaaaaaagacttcctcatgattttgatagaaaaatataatcgt---gtttgattcatgtaatcaacctcgccttcgcctttgtttcctctataaata |
33556911 |
T |
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| Q |
315 |
ttgggacttatgcacgccactcactttaaggaagctcgcacacatatagatcaacaaaactacacattgaaaccaaactaaaaatggttcactgtcaatt |
414 |
Q |
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| T |
33556910 |
ttgggacttatgcacggcactcactttaaggaagctcgcacacatatagatcaacaaaactacacactgaaaccaaact-aaaatggttcactgtcaatt |
33556812 |
T |
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| Q |
415 |
aacgtttttgctagcagttctaaccattttccacgtttcaaccacctcaaccgcaacaccaccaccgccaccgctttcagccaccgcaagggagtttcta |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33556811 |
aacgtttttgctagcagttctaaccattttccacgtttcaaccacctcaaccgcaa---caccaccgccaccgctttcagccacggcaagggagtttcta |
33556715 |
T |
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| Q |
515 |
caaacacacaaccaagcaagagcatcagtaggtgtagagccactaacatggagtgagcagctagccaacac |
585 |
Q |
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| T |
33556714 |
caaacacacaaccaagcaagagcatcagtaggtgtagagccactaacatggagtgagcagctagccaacac |
33556644 |
T |
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