View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8970_low_7 (Length: 600)
Name: NF8970_low_7
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8970_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 266 - 585
Target Start/End: Original strand, 41702763 - 41703081
Alignment:
| Q |
266 |
ggagctcccttcagtccaaatacaggaagcttaagactcaatttgtctcccgcatcattcactcatttgcagagtatactttgagtatattttactcagc |
365 |
Q |
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| T |
41702763 |
ggagctcccttcagtccaaatacaggaagcttaagactcaatttgtctcccgcatcattcactcatttgcagagtatactt-gagtatattttactcagc |
41702861 |
T |
|
| Q |
366 |
atttggatgaatgagtcagcagctaattaaatcttacggcaacccatgagtggactaaagaaagctctctctcatttaccattcgccatgcatccttcca |
465 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702862 |
atttggatgaatgagtcagcagctaattaaatcttacagcaacccatgagtggactaaagaaagctctctctcatttaccattcgccatgcatccttcca |
41702961 |
T |
|
| Q |
466 |
tgattctatcagctagatctgtgtgatatatacatattcaataagcaaggttagttagtacaagtaatgaaagtaactatatgaagaaactaactcaggt |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
41702962 |
tgattctatcagctagatctgtgtgatatatacatattcaataagcaaggttagttagtacaagtaatgaaagtaattatatgaagaaactaacacaggt |
41703061 |
T |
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| Q |
566 |
cgtatcatatggtataatat |
585 |
Q |
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|||||||||||||||||||| |
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| T |
41703062 |
cgtatcatatggtataatat |
41703081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 41702511 - 41702684
Alignment:
| Q |
14 |
agaaaccccacgaccattgttaattactcactcttaaaagcaaatacagtatagtccaagatcttacacaagtcagtcataacaagaagaaaggtttaat |
113 |
Q |
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| T |
41702511 |
agaaaccccacgaccattgttaattactcactcttaaaagcaaatacagtatagtccaagatcttacacaagtcagtcataacaagaagaaagtt----- |
41702605 |
T |
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| Q |
114 |
taattaattaattatatttccttaaagggtaagaacgtgcaggtgcttttagtttagataaatctcatgtgtatgcaaatat |
195 |
Q |
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| T |
41702606 |
---ttaattaattatatttccttaaagggtaagaacgtgcgggtgcttttagtttagataaatctcatgtgtatgcaaatat |
41702684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 266 - 435
Target Start/End: Complemental strand, 2425709 - 2425538
Alignment:
| Q |
266 |
ggagctcccttcagtccaaatacaggaagcttaagactcaatttgtctcccgcatcattcactcatttgcagagtatac-tttgagtatattttactcag |
364 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
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| T |
2425709 |
ggagctcccttcagtccaagtataggaaacttaagattcaatttgtctcccgcatcattcactcatttgatgagtatatgtttctatatattttactcaa |
2425610 |
T |
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| Q |
365 |
catttggatgaatgagtcagcagctaatt-aaatcttacggcaacccatgagtggactaaagaaagctctct |
435 |
Q |
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||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |
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| T |
2425609 |
catttggatgaatgagtcagcagctaattgaaatcttattgtcacccatgagtggactaaagaaagctctct |
2425538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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