View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8970_low_9 (Length: 580)

Name: NF8970_low_9
Description: NF8970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8970_low_9
NF8970_low_9
[»] chr7 (17 HSPs)
chr7 (18-567)||(43029838-43030384)
chr7 (416-567)||(42800851-42801002)
chr7 (416-567)||(42835523-42835671)
chr7 (416-507)||(35070415-35070506)
chr7 (416-507)||(35096451-35096542)
chr7 (416-496)||(35079113-35079193)
chr7 (416-508)||(35093203-35093295)
chr7 (417-509)||(33864546-33864638)
chr7 (421-509)||(34150969-34151057)
chr7 (421-509)||(34176067-34176155)
chr7 (416-482)||(36741465-36741531)
chr7 (416-501)||(38288226-38288311)
chr7 (420-504)||(45582145-45582229)
chr7 (424-469)||(38155331-38155376)
chr7 (418-478)||(38283759-38283819)
chr7 (439-499)||(44958707-44958767)
chr7 (424-540)||(38185566-38185682)
[»] chr4 (1 HSPs)
chr4 (18-373)||(46528082-46528443)
[»] chr5 (1 HSPs)
chr5 (416-508)||(9666623-9666715)
[»] chr6 (6 HSPs)
chr6 (417-509)||(25570603-25570695)
chr6 (417-509)||(26005071-26005163)
chr6 (416-478)||(4161461-4161523)
chr6 (420-478)||(4223085-4223143)
chr6 (460-509)||(26105095-26105144)
chr6 (417-458)||(26123895-26123936)
[»] scaffold0176 (1 HSPs)
scaffold0176 (417-472)||(20474-20529)
[»] chr1 (1 HSPs)
chr1 (416-478)||(52214741-52214803)
[»] chr3 (1 HSPs)
chr3 (418-478)||(2220578-2220638)


Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Complemental strand, 43030384 - 43029838
Alignment:
Q  18 attgacactgcagctcaaattttatgaaaacatgtgacctcaaagccattgtcaaatgcagaccgttagaaatttatttctctatggaaactagaattct 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  43030384 attgacactgcagctcaaattttatgaaaacatgtgccctcaaagccattgtcaaatgcagaccgtaagaaatttatttttctatggaaactagaatttt 43030285  T
Q  118 ttgtttttagttcgataatatcatctttaaaagttaaacactatctgaccacgaaatctttgtggcatcattcatgcagattaagaaagactgaagaggt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43030284 ttgtttttagttcgataatatcatctttaaaagttaaacactatctgaccacgaaatctttgtggtatcattcatgcagattaagaaagactgaagaggt 43030185  T
Q  218 gtgaaagtagaagttacatatagaggaagttttagaaggaagtaaatgataataggattaacatcacaacctacaagggatcactcatgtatgactttgt 317  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43030184 gtgaaagtagaagt--catatagaggaagttttagaaggaagtacatgataataggattaacatcacaacctacaagggatcactcatgtatgactttgt 43030087  T
Q  318 aaacttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacgannnnnnnctcttttccttccattaccaaaaatggatttatgaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  43030086 aaacttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacga-ttttttctcttttccttccattaccaaaaatggatttatgaa 43029988  T
Q  418 cactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaattaa 517  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43029987 cactataaaattataagctgtcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaattaa 43029888  T
Q  518 tccaactatgagcacctatatagtatctgtcacgatcattagtgtctctg 567  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  43029887 tccatctacgagcacctatatagtatctgtcacgatcattagtgtctctg 43029838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 416 - 567
Target Start/End: Complemental strand, 42801002 - 42800851
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaatt 515  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  42801002 aacattacaaaattataaggtggcattgttcatttacttcatctttaagcatctcgtgaataacattctcttcaatccaacaaccaccaccgcagaaatt 42800903  T
Q  516 aatccaactatgagcacctatatagtatctgtcacgatcattagtgtctctg 567  Q
    |||||| |||  |||| ||||||||||||||||||||||| |||| ||||||    
T  42800902 aatccatctactagcatctatatagtatctgtcacgatcagtagtatctctg 42800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 416 - 567
Target Start/End: Complemental strand, 42835671 - 42835523
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaatt 515  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| ||||    
T  42835671 aacactacaaaattataaggtggcattgttcatttacttcatctttaagcatctcgtgaat---attctctccaatgcaacaaccaccaccacagaaatt 42835575  T
Q  516 aatccaactatgagcacctatatagtatctgtcacgatcattagtgtctctg 567  Q
    |||||| |||  |||| ||||||||||||||||||||||| |||||||||||    
T  42835574 aatccatctactagcatctatatagtatctgtcacgatcagtagtgtctctg 42835523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 35070415 - 35070506
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccacca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  35070415 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacgacaaccacca 35070506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 35096451 - 35096542
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccacca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  35096451 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctcttcaaaccaacgacaaccacca 35096542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 35079113 - 35079193
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35079113 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcatgaataacattctctccaaaccaac 35079193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 416 - 508
Target Start/End: Original strand, 35093203 - 35093295
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccac 508  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||    
T  35093203 aacactacaaaattataagctgacattgttcatttacttcatctataagcatctcatgaataacattctctccaaaccaacgacaaccaccac 35093295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 33864638 - 33864546
Alignment:
Q  417 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 509  Q
    |||||||| ||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||| ||||||||||    
T  33864638 acactacagaataataagctgacattgttcatttacttcatccttaagcatctcgcgaataacattctttcctaaccaacaatcaccaccaca 33864546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 421 - 509
Target Start/End: Complemental strand, 34151057 - 34150969
Alignment:
Q  421 tacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 509  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||  |||||||||    
T  34151057 tacaaaattataagctgacattgttcatttacttcatctttaagcatctcgtaaataacattatttcctaaccaacaatgaccaccaca 34150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 421 - 509
Target Start/End: Original strand, 34176067 - 34176155
Alignment:
Q  421 tacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 509  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||  |||||||||    
T  34176067 tacaaaattataagctgacattgttcatttacttcatctttaagcatctcgtaaataacattatttcctaaccaacaatgaccaccaca 34176155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 482
Target Start/End: Original strand, 36741465 - 36741531
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacatt 482  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| | |||||||||    
T  36741465 aacactacaaaattataagttgacattgtttatttacttcatctttaagcatctcataaataacatt 36741531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 38288311 - 38288226
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaacca 501  Q
    ||||||||| ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| | ||||||||||||||    
T  38288311 aacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaacca 38288226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 45582229 - 45582145
Alignment:
Q  420 ctacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccacca 504  Q
    ||||||||||||||| || ||| ||||||||||||| ||||| |||||||| ||||||||||| |   |||||||||||| ||||    
T  45582229 ctacaaaattataagttgacatggttcatttacttcgtctttgagcatctcctgaataacattttgcacaaaccaacaacaacca 45582145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 38155331 - 38155376
Alignment:
Q  424 aaaattataagctggcattgttcatttacttcatctttaagcatct 469  Q
    ||||||||||| || |||||||||| ||||||||||||||||||||    
T  38155331 aaaattataagttgacattgttcatgtacttcatctttaagcatct 38155376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 38283759 - 38283819
Alignment:
Q  418 cactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 478  Q
    |||||||||| || |||||| ||||||||||| |||||||||| |||||| || |||||||    
T  38283759 cactacaaaactacaagctgacattgttcattaacttcatcttgaagcatgtcatgaataa 38283819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 44958767 - 44958707
Alignment:
Q  439 cattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaac 499  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||| |   ||||||||||||    
T  44958767 cattgttgatttactttatctttaagcatctcttgaataacattatactcaaaccaacaac 44958707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 540
Target Start/End: Original strand, 38185566 - 38185682
Alignment:
Q  424 aaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaattaatccaac 523  Q
    ||||||||||| || ||||| | |  ||||||||||||||||||||  |||||| |||||  | |||||||||||| | || |  ||| |||| |||| |    
T  38185566 aaaattataagttgacattggtgaagtacttcatctttaagcatcttatgaatatcattccattcaaaccaacaacaatcatctgagtcattagtccatc 38185665  T
Q  524 tatgagcacctatatag 540  Q
    ||| ||||||| |||||    
T  38185666 tatcagcacctgtatag 38185682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 46528082 - 46528443
Alignment:
Q  18 attgacactgcagctcaaattttatgaaaacatgtgacctcaaagccattgtcaaatgcagaccg--------ttagaaatttatttctctatggaaact 109  Q
    ||||||| |||||||||||||||| ||||| |||||  |||||||||||||||| ||||||| ||        | ||||||| || | ||||||| ||||    
T  46528082 attgacattgcagctcaaattttaggaaaagatgtgcactcaaagccattgtcagatgcagatcgcatcaaggtaagaaattcatatttctatggcaact 46528181  T
Q  110 agaattctttgtttttagttcgataatatcatctttaaaagttaaacactatctgaccacgaaatctttgtggcatcattcatgcagattaagaaagact 209  Q
    |||||||| ||||||||||| ||||| |||||||  |||| |||| ||||||| ||| | ||||||||||||| |||| ||| |||||||||||||| ||    
T  46528182 agaattctctgtttttagttggataacatcatctccaaaaattaagcactatccgacaaagaaatctttgtggtatcactcaagcagattaagaaagcct 46528281  T
Q  210 gaagaggtgtgaaagtagaagttacatatagaggaagttttagaaggaagtaaatgataataggattaacatcacaacctacaagggatcactcatgtat 309  Q
      | |||||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||| ||  ||||| ||||    
T  46528282 tgaaaggtgtgaaagtagaagttacatatagaggaagttttagaaggaagtacaggataactggattaacatcacaacctacaagaga--actcaggtat 46528379  T
Q  310 gactttgtaaacttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacg 373  Q
    | ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46528380 ggctttgtaattttttgcattacaaaaagttgtgaatttaacacattggacatttgaggtaacg 46528443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 416 - 508
Target Start/End: Complemental strand, 9666715 - 9666623
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccac 508  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||||    
T  9666715 aacactacaaaattataagttggcattgttcatttacttcatctttaaacatctcatgaataacattctctccaaaccaacgacaaccaccac 9666623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 25570695 - 25570603
Alignment:
Q  417 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 509  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  25570695 acactacagaattataagctgacattgttcatttacttcatccttaagcatctcgtgaataacattctttcctaaccaacaatcaccaccaca 25570603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 509
Target Start/End: Complemental strand, 26005163 - 26005071
Alignment:
Q  417 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 509  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  26005163 acactacagaattataagctgacattgttcatttacttcatccttaagcatctcgtgaataacattctttcctaaccaacaatcaccaccaca 26005071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 4161461 - 4161523
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 478  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||    
T  4161461 aacactacaaaattataagttggcattgttcatctacttcatctttaagcacctcatgaataa 4161523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 4223085 - 4223143
Alignment:
Q  420 ctacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 478  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||| ||| |||||||    
T  4223085 ctacaaaattataagttggcattgttcatctacttcatctgtaagcacctcatgaataa 4223143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 26105144 - 26105095
Alignment:
Q  460 ttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 509  Q
    |||| |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  26105144 ttaaacatctcgtgaataacattctttcctaaccaacaatcaccaccaca 26105095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 26123936 - 26123895
Alignment:
Q  417 acactacaaaattataagctggcattgttcatttacttcatc 458  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  26123936 acactacagaattataagctgacattgttcatttacttcatc 26123895  T

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Target: scaffold0176 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 20474 - 20529
Alignment:
Q  417 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgt 472  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  20474 acactacaaaattataagctgacattgttcatttacttcatccttaagcatctcgt 20529  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 52214741 - 52214803
Alignment:
Q  416 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 478  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |||||||    
T  52214741 aacactacaaaattataagttgggattgttcatctacttcatctttaagcacctcatgaataa 52214803  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 2220578 - 2220638
Alignment:
Q  418 cactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 478  Q
    ||||| |||| ||||||||| ||||||||||| |||||||||| |||||| || |||||||    
T  2220578 cactaaaaaactataagctgacattgttcattaacttcatcttgaagcatgtcatgaataa 2220638  T

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