View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_high_21 (Length: 493)
Name: NF8971_high_21
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_21 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 9016904 - 9016432
Alignment:
| Q |
18 |
aaatcaaaccctcaatagtgtagtgtgtccttttccttgtccttgtgtctcaaaaaagaagttaaatatcaccatcacaaatttcattttctctttgtag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9016904 |
aaatcaaaccctcaatagtgtagtgtgtccttttccttgtccttgtgtctcaaaaaagaagttaaatatcaccatcacaaatttcattttctctttgtag |
9016805 |
T |
|
| Q |
118 |
aaacaaattaaccatggaagaagtttggaaagacataaacctgtcttcattgaatgaccaaaacacacgacccatgataatgagtactcgtaattccact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9016804 |
aaacaaattaaccatggaagaagtttggaaagacataaacctgtcttcattgaatgaccaaaacacacgacccatgataatgagtactcgtaattccact |
9016705 |
T |
|
| Q |
218 |
tttggtggtggtggtgttatccttcaagactttctcactcgaccccttactttagacccaccaaaaagcttagattattcttctaataattcatcttctt |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9016704 |
tttggtggtggtg---ttatccttcaagactttctcactcgaccccttactttagacccaacaaaaagcttagattattcttctaataattcatcttctt |
9016608 |
T |
|
| Q |
318 |
ctgttgcttcagatcaaaataacaataatgcttcattttattgccctatctctacgaccccaccacctcttgtcactgctcttagtttgaactctcgtcc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9016607 |
ctgttgcttcagatcaaaataacaataatgcctcattttattgccctatctctacgaccccaccacctcttgtcactgctcttagtttgaactctcgtcc |
9016508 |
T |
|
| Q |
418 |
tgattttctctatgatcctcttatcagacacaacaagcataataattctcagttactacttcaacagcaacaacat |
493 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9016507 |
tgattttctctatgaccctcttatcagacacaacaagcataataattctcagttactacttcaacagcaacaacat |
9016432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 395
Target Start/End: Complemental strand, 5042042 - 5041928
Alignment:
| Q |
281 |
aaaagcttagattattcttctaataattcatcttcttctgttgcttcagatcaaaataacaataatgcttcattttattgccctatctctacgaccccac |
380 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||| |||||||| || |||||| || |
|
|
| T |
5042042 |
aaaagcatcgattattcttctaataattcatcttccttcattgcttcatatcaaaataacaataatgcttcctttttttgccctacttcaacgaccacat |
5041943 |
T |
|
| Q |
381 |
cacctcttgtcactg |
395 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5041942 |
tacctcttgtcactg |
5041928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 5042122 - 5042048
Alignment:
| Q |
153 |
taaacctgtcttcattgaatgaccaaaacacacgacccatgataatgagtactcgtaattccacttttggtggtg |
227 |
Q |
| |
|
||||||| ||||||||||| | |||||||||| || |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5042122 |
taaacctatcttcattgaaccatgaaaacacacgccctgtgatgatgagtactcgtaattctacttttggtggtg |
5042048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 5042236 - 5042196
Alignment:
| Q |
55 |
tgtccttgtgtctcaaaaaagaagttaaatatcaccatcac |
95 |
Q |
| |
|
||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
5042236 |
tgtccttttctctctaaaaagaagttaaatatcaccatcac |
5042196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University