View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_high_22 (Length: 485)
Name: NF8971_high_22
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 45 - 467
Target Start/End: Complemental strand, 33158951 - 33158527
Alignment:
| Q |
45 |
attagtacatgttaattagattcataagaaaaatcataatatat--gagttttgaacataataaaaggttttataagatttatgaccaaccaaacactta |
142 |
Q |
| |
|
||||||||||| |||||| |||||||| || ||||| |||| | ||||||| | |||||| || |||||||| ||||| ||||||||||||||||| |
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| T |
33158951 |
attagtacatggtaattaaattcataaaaattatcatgatatgtaagagttttcattgtaataagagattttataaaatttacgaccaaccaaacactta |
33158852 |
T |
|
| Q |
143 |
cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158851 |
cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt |
33158752 |
T |
|
| Q |
243 |
tactccccaaacatgaatcatatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33158751 |
tactccccaaacatgaatcatatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcc |
33158652 |
T |
|
| Q |
343 |
tcctttatgaacctgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33158651 |
tcctttatgaacctgatgccttttatggttgcaaagtgatgtaacacataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcat |
33158552 |
T |
|
| Q |
443 |
tccattcctccacaataggaatcca |
467 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
33158551 |
tccattcctccacaataggaatcca |
33158527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 45 - 467
Target Start/End: Complemental strand, 33181794 - 33181370
Alignment:
| Q |
45 |
attagtacatgttaattagattcataagaaaaatcataatatat--gagttttgaacataataaaaggttttataagatttatgaccaaccaaacactta |
142 |
Q |
| |
|
||||||||||| |||||| |||||||| || ||||| |||| | ||||||| | |||||| || |||||||| ||||| ||||||||||||||||| |
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|
| T |
33181794 |
attagtacatggtaattaaattcataaaaattatcatgatatgtaagagttttcattgtaataagagattttataaaatttacgaccaaccaaacactta |
33181695 |
T |
|
| Q |
143 |
cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33181694 |
cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt |
33181595 |
T |
|
| Q |
243 |
tactccccaaacatgaatcatatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33181594 |
tactccccaaacatgaatcatatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcc |
33181495 |
T |
|
| Q |
343 |
tcctttatgaacctgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33181494 |
tcctttatgaacctgatgccttttatggttgcaaagtgatgtaacacataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcat |
33181395 |
T |
|
| Q |
443 |
tccattcctccacaataggaatcca |
467 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
33181394 |
tccattcctccacaataggaatcca |
33181370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 111 - 463
Target Start/End: Complemental strand, 33140536 - 33140184
Alignment:
| Q |
111 |
ttttataagatttatgaccaaccaaacacttacccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgat |
210 |
Q |
| |
|
|||| |||||||||||| || | ||| || |||||| |||||||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
33140536 |
ttttttaagatttatgatcagcgaaatacgtacccatttaatctttatatcaatgtcagccagcagggaatcaacccacattaattcttgggtcattgat |
33140437 |
T |
|
| Q |
211 |
tcttctttggttttggtgaaagggaatccctttactccccaaacatgaatcatatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaa |
310 |
Q |
| |
|
|||||||||| ||||| | ||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
33140436 |
tcttctttggatttggagtaagggaagccctttactccccaaacctgaatcatatggaatgcattatgatgcagaatctttccttgtgggctcaacacaa |
33140337 |
T |
|
| Q |
311 |
caaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagactt |
410 |
Q |
| |
|
||| ||||| ||| |||||||||||||||||||||||||| || |||||||||| || | |||||||||||| || |||||||| ||||| || ||||| |
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|
| T |
33140336 |
caaataaaggcttctgcttgaaatgcaactcctcctttatgtacttgatgcctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgactt |
33140237 |
T |
|
| Q |
411 |
caaggaatcaaacttcttcctccccctatcattccattcctccacaataggaa |
463 |
Q |
| |
|
||| |||||||| || ||| || | |||||||||||||||||||||| |||| |
|
|
| T |
33140236 |
caaagaatcaaattttttcttcaacttatcattccattcctccacaatgggaa |
33140184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 117 - 467
Target Start/End: Original strand, 33287772 - 33288122
Alignment:
| Q |
117 |
aagatttatgaccaaccaaacacttacccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttct |
216 |
Q |
| |
|
||||||| |||||| | ||| ||||||||| ||||||| |||||||||| |||||| || |||| |||||||| ||| ||| ||||| ||||||| |||| |
|
|
| T |
33287772 |
aagatttgtgaccagcaaaatacttacccatttaatctgtatatcaatgtcaaccaacaaggaaacaacccactttaattcctgggttattgatttttct |
33287871 |
T |
|
| Q |
217 |
ttggttttggtgaaagggaatccctttactccccaaacatgaatcatatgaaatgcattctgatgcagaatctttccttgtgtactcaacacaacaacca |
316 |
Q |
| |
|
||| || |||| |||| || |||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
33287872 |
ttgtcttcggtgtaaggaaaaccctttaccccccaaacttgaatcatatggaatgcattatgatgcagaatctttccttgtgggctcaacacaacaacca |
33287971 |
T |
|
| Q |
317 |
aaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaagga |
416 |
Q |
| |
|
|||| ||| | |||||||||||||||||||||||| || |||||||||| || | |||||||||||| || |||||||| ||||| || |||||||| || |
|
|
| T |
33287972 |
aaggcttctgattgaaatgcaactcctcctttatgtacttgatgcctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaaga |
33288071 |
T |
|
| Q |
417 |
atcaaacttcttcctccccctatcattccattcctccacaataggaatcca |
467 |
Q |
| |
|
|||||| || |||||| | ||||| ||||||| ||||||| |||||||| |
|
|
| T |
33288072 |
atcaaattttttcctcaacttatcagtccattcatccacaacgggaatcca |
33288122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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