View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_high_33 (Length: 362)
Name: NF8971_high_33
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 9090925 - 9090614
Alignment:
| Q |
19 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaa |
118 |
Q |
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| T |
9090925 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttggtgaggataggaaatcttctcagttggttttgtaaaa |
9090826 |
T |
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| Q |
119 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
218 |
Q |
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| T |
9090825 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
9090726 |
T |
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| Q |
219 |
aataacaatgctaacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttg |
318 |
Q |
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| T |
9090725 |
aataacaatgctaacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttg |
9090626 |
T |
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| Q |
319 |
aacttaaagcaa |
330 |
Q |
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| T |
9090625 |
aacttaaagcaa |
9090614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 327
Target Start/End: Complemental strand, 9095229 - 9094973
Alignment:
| Q |
61 |
atgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaatcagcaacattggcaacggtgataccccacttaaatgcaggt |
160 |
Q |
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| T |
9095229 |
atgcatgcgcatacctatttgttgaggataggaaagcttctcaggtggttttgcaaaatcagcaatattggcaatgctgataccccacttaaatgtaggg |
9095130 |
T |
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| Q |
161 |
gcccaaaagtgaactgcacaacaaaagtggtcaattaatggattga-tacaggtttgacaataacaatgctaacacttgacaacaacactggtgactgga |
259 |
Q |
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| T |
9095129 |
gcccaaaagtgaactgcacaaaataagtggtcaatttatacatcgattaca-gcttcacaatgtcaatattaacacttgaaaacaacattggtgactgga |
9095031 |
T |
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| Q |
260 |
aacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaatctatttggtatttgaacttaaag |
327 |
Q |
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| T |
9095030 |
aa-------gagacaacagtttgaatcaggtgaa---aatgtaatctatttggtacttgtacttaaag |
9094973 |
T |
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