View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_high_36 (Length: 352)
Name: NF8971_high_36
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 2356383 - 2356707
Alignment:
| Q |
12 |
atcaagagaagaagatggagaaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagact |
111 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356383 |
atcaagagaagaatatggagaaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagaca |
2356482 |
T |
|
| Q |
112 |
aaaatatgaagggaaaatgccaagaaagaaaatcaaaataggaattcctttcggcgaacagcccatcaagcaaatcaacaaagttatttccataaaagag |
211 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
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| T |
2356483 |
aaaatataaagggaaaatgccaagaaagaaaatcaaaataggaattcctttcggcgaatagtccatcaagcaaatcaacagagttatttccataaaagag |
2356582 |
T |
|
| Q |
212 |
ctaatttcaaatttaactatagtgaagaataatatcaaacaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacat |
311 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356583 |
ctaagttcaaatttaactatagtgaagaataatatcaaacaaatccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacat |
2356682 |
T |
|
| Q |
312 |
tgaatgccgcaatttcagttggcct |
336 |
Q |
| |
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||| |||| |||||||||||||||| |
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| T |
2356683 |
tgattgccacaatttcagttggcct |
2356707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 2353044 - 2352720
Alignment:
| Q |
12 |
atcaagagaagaagatggagaaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagact |
111 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |
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| T |
2353044 |
atcaagagaagaatatggagaagacatttagtgcaaccaatcaaatttctaaatatataatgcattttcctatataatgaagcagttcagttcacaaact |
2352945 |
T |
|
| Q |
112 |
aaaatatgaagggaaaatgccaagaaagaaaatcaaaataggaattcctttcggcgaacagcccatcaagcaaatcaacaaagttatttccataaaagag |
211 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || |||||||||||| ||| |
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| T |
2352944 |
aaaatctgaggggaaaatgccaagaaagaaaatcaaaatattaattcctttcggcaaacagtccatcaagcaaatcaacggagatatttccataaatgag |
2352845 |
T |
|
| Q |
212 |
ctaatttcaaatttaactatagtgaagaataatatcaaacaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacat |
311 |
Q |
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|||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
2352844 |
ctaattgaaaatttaactatagtaaagaataatataaaacaaaaccaactaacacagtaattgtgaaatagccatgacatcaaagtacctgctacaacat |
2352745 |
T |
|
| Q |
312 |
tgaatgccgcaatttcagttggcct |
336 |
Q |
| |
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|||| |||||||||||||||||||| |
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|
| T |
2352744 |
tgaacgccgcaatttcagttggcct |
2352720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 3500834 - 3500937
Alignment:
| Q |
233 |
gtgaagaataatatcaaacaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgaatgccgcaatttcagttg |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3500834 |
gtgaagaataatatcaaacaaaaccaaccaacacagtaatattgaaatagccatgacatcaaagtacctgctacaacattgaatgccgcgatttcagttg |
3500933 |
T |
|
| Q |
333 |
gcct |
336 |
Q |
| |
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|||| |
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| T |
3500934 |
gcct |
3500937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 3512426 - 3512620
Alignment:
| Q |
12 |
atcaagagaagaagatggagaaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaattcacagact |
111 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||| ||| ||||||| ||||||||||| |||| |||||| ||||||| ||||||| |||| ||||| |
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| T |
3512426 |
atcaagaggagaatctggagaaggcattaagtgcaactaataaaatttccaaatatataattcattagcctatttaatgaaacagttcagttcagagact |
3512525 |
T |
|
| Q |
112 |
aaaatatgaagggaaaatgccaagaaagaaaatcaaaataggaattcctttcggcgaacagcccatcaagcaaatcaacaaagttatttccataaa |
207 |
Q |
| |
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|||| ||| |||||||||||||||||||| |||||||| || ||||| | |||||||| ||||||||||||||||| || |||||||||||| |
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| T |
3512526 |
aaaagctgaggggaaaatgccaagaaagaacatcaaaattttaactccttac-gcgaacagtccatcaagcaaatcaacggagatatttccataaa |
3512620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 3500150 - 3500239
Alignment:
| Q |
12 |
atcaagagaagaagatggagaaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaa |
101 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3500150 |
atcaagagaagaatctggagaaggcatttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaagcaattcaa |
3500239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 3513172 - 3513258
Alignment:
| Q |
250 |
acaaaaccaaccaacacagtaatagtgaaatagccacgacatcaaagtacctgctacaacattgaatgccgcaatttcagttggcct |
336 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| | ||| ||||||||||||| |
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| T |
3513172 |
acaaaactaaccaacacagtaatagtgaaatagctgcgacatcaaagtacctgctacgacgttgaatactgcattttcagttggcct |
3513258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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