View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_high_38 (Length: 348)
Name: NF8971_high_38
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 43049052 - 43049382
Alignment:
| Q |
1 |
gaacaacaacaaatatcacgtacagnnnnnnnntaatgaagaaaaccgtaaagaaatgaaatccctatgaatactgttgtgccaagaaaacgatcagatg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43049052 |
gaacaacaacaaatatcacgtacagaaaaaaaataatgaagaaaaccgtaaagaaatcaaatccttatgaatactgttgtgccaagaaaacgatcagatg |
43049151 |
T |
|
| Q |
101 |
ctgacattagtagaaatcaacatcacacttggtcctagtgaatgttgcattgctaattttagaactcaaaggaactttgaggtcacatttcaccttaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43049152 |
ctgacattagtagaaatcaacatcacacttggtcctagtgaatgttgcattgctaattttagaactcaaaggaactttgaagtcacatttcaccttaggc |
43049251 |
T |
|
| Q |
201 |
ttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagatatcataaacttcatcactcttgtctttgttgaact |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43049252 |
ttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagatatcataaacttcatcactcttgtctttgttaaact |
43049351 |
T |
|
| Q |
301 |
cggagacttgatcgctgtcaagcacgaaaac |
331 |
Q |
| |
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| T |
43049352 |
cggagacttgatcgctgtcgagcacgaaaac |
43049382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 43062002 - 43062149
Alignment:
| Q |
166 |
tcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
265 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||| | ||||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
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| T |
43062002 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
43062101 |
T |
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| Q |
266 |
atcataaacttcatcactcttgtctttgttgaactcggagacttgatc |
313 |
Q |
| |
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| T |
43062102 |
accataaactccaacactcttgtctttgctgaattccgagacttgatc |
43062149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 312
Target Start/End: Original strand, 43024059 - 43024212
Alignment:
| Q |
159 |
ttagaactcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctca |
258 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| || || ||| | |||| |||||| || ||| |||||||| ||||| ||||| || ||| |
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| T |
43024059 |
ttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatctaatttcgaagtagagtttca |
43024158 |
T |
|
| Q |
259 |
catagatatcataaacttcatcactcttgtctttgttgaactcggagacttgat |
312 |
Q |
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| T |
43024159 |
catagatatcataaacttcaacactcttatctttgttaaactcagagacttgat |
43024212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 43054750 - 43054886
Alignment:
| Q |
165 |
ctcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacataga |
264 |
Q |
| |
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|||||||||||| ||||||| ||||| |||||||| ||| | | | ||||| | || |||||| | ||||||||||||||||| ||| ||||||||| |
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| T |
43054750 |
ctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacataga |
43054849 |
T |
|
| Q |
265 |
tatcataaacttcatcactcttgtctttgttgaactc |
301 |
Q |
| |
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||||||||||| || || |||| |||||||||||||| |
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|
| T |
43054850 |
tatcataaactccaacattcttatctttgttgaactc |
43054886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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