View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_high_55 (Length: 248)
Name: NF8971_high_55
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 4924673 - 4924455
Alignment:
| Q |
18 |
atcatcaaccttttaaatttgcacccgtgacaccaacccaatttcttgaagagaaaaattggtctccatttgaaatcatgaacaatattcatcaaccgga |
117 |
Q |
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| T |
4924673 |
atcatcaaccttttaaatttgcacccgtgacaccaacccaatttcttgaagagaaaaattggtctccatttgaaatcatgaacaatattcatcaaccgga |
4924574 |
T |
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| Q |
118 |
attcaaaaggctactttccaatgtaacttctaaaacttggtcaaaacctattgagaaagttgaatggaacaacacaagtagtagtattacaaataataca |
217 |
Q |
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| T |
4924573 |
attcaaaaggctactttccaatgtaacttctaaaacttggtcaaaacctattgagaaagttgaatggaacaacacaagtagtagtattacaaataataca |
4924474 |
T |
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| Q |
218 |
gaatatctattgatgtcca |
236 |
Q |
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||||||||||||| ||||| |
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| T |
4924473 |
gaatatctattgaagtcca |
4924455 |
T |
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