View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_high_61 (Length: 215)
Name: NF8971_high_61
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 39471984 - 39472164
Alignment:
| Q |
20 |
ccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataa |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471984 |
ccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataa |
39472083 |
T |
|
| Q |
120 |
ccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472084 |
ccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctc |
39472164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 39475454 - 39475634
Alignment:
| Q |
20 |
ccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataa |
119 |
Q |
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||||||||||||||||||||||||||||| || ||||||| | | | | ||| || |||| | || ||||||| ||||||||||||||| |||||||| |
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| T |
39475454 |
ccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataa |
39475553 |
T |
|
| Q |
120 |
ccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
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| T |
39475554 |
ccgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctc |
39475634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 39464750 - 39464567
Alignment:
| Q |
25 |
atgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtc |
124 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| |||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
39464750 |
atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc |
39464651 |
T |
|
| Q |
125 |
tccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctctgcttctc |
208 |
Q |
| |
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|||||||||| | ||||| |||||| ||||||| | | ||||| |||||||||||||||||||| |||| || |||| ||||| |
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| T |
39464650 |
tccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctc |
39464567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 39450949 - 39451128
Alignment:
| Q |
21 |
caagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| | || | | ||| ||||||| | || || || ||||||||||||||||| ||||||||| |
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| T |
39450949 |
caagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataac |
39451048 |
T |
|
| Q |
121 |
cgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||| |
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| T |
39451049 |
cgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctc |
39451128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 39458511 - 39458343
Alignment:
| Q |
24 |
gatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt |
123 |
Q |
| |
|
|||||||||||||||||||||| || |||||| || | || |||||| ||||||| | ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
39458511 |
gatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgt |
39458412 |
T |
|
| Q |
124 |
ctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatccctt |
192 |
Q |
| |
|
|||||||||||| | || || || ||||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
39458411 |
ctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatccctt |
39458343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 39470978 - 39470790
Alignment:
| Q |
20 |
ccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataa |
119 |
Q |
| |
|
|||| |||||||||| |||||||||||| || ||||||| |||| |||||| |||||||||| | ||||| || |||||||||||||||| |||||| |
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| T |
39470978 |
ccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataa |
39470879 |
T |
|
| Q |
120 |
ccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctctgcttctc |
208 |
Q |
| |
|
||| ||| |||||||||| ||||| || ||||||||||||| ||||| | ||||||||| |||||||| |||| ||||||| ||||| |
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| T |
39470878 |
ccgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctc |
39470790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 39454592 - 39454767
Alignment:
| Q |
25 |
atgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgtc |
124 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| | || || ||| ||||||| | || ||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
|
| Q |
125 |
tccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||| ||||| ||||| |||| |||||| ||||| ||||| |
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|
| T |
39454692 |
tccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctc |
39454767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 39486407 - 39486554
Alignment:
| Q |
20 |
ccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||| || | || |||||| ||||||| | || || ||||| ||||||||||||||||||||||| |
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|
| T |
39486407 |
ccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataa |
39486506 |
T |
|
| Q |
120 |
ccgtctccgaataactgttttagttatcaaattcccacacatcacaga |
167 |
Q |
| |
|
||||||||||||||| | || || |||||||||||||||| |||||| |
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| T |
39486507 |
ccgtctccgaataaccatcttggtcatcaaattcccacacaccacaga |
39486554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 39480325 - 39480441
Alignment:
| Q |
24 |
gatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt |
123 |
Q |
| |
|
|||||||||||||||||||||| || || ||| || | || |||||| ||||||| | || || || |||||||||||||||||||||||||||||| |
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|
| T |
39480325 |
gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgt |
39480424 |
T |
|
| Q |
124 |
ctccgaataactgtttt |
140 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
39480425 |
ctccgaataactgtttt |
39480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 39460198 - 39460372
Alignment:
| Q |
20 |
ccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataa |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||||||| | | | | ||| ||| ||| | || ||||| || |||||||||| |||||||||||| |
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|
| T |
39460198 |
ccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataa |
39460297 |
T |
|
| Q |
120 |
ccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcc |
194 |
Q |
| |
|
|| |||||||| ||||| |||| || ||| ||||| ||| ||||| ||||||| |||||||||| ||||| |
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|
| T |
39460298 |
gcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcc |
39460372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 43312730 - 43312626
Alignment:
| Q |
24 |
gatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt |
123 |
Q |
| |
|
|||||||||| ||||||||||||| || ||| ||| | || ||| ||| |||| || | || |||||||| |||||||| |||||||||||||||||| |
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| T |
43312730 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgt |
43312631 |
T |
|
| Q |
124 |
ctccg |
128 |
Q |
| |
|
||||| |
|
|
| T |
43312630 |
ctccg |
43312626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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