View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_high_8 (Length: 681)
Name: NF8971_high_8
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 12 - 531
Target Start/End: Complemental strand, 45059757 - 45059238
Alignment:
| Q |
12 |
gattattctcaaaagtccttctaccaatatcaaaatttgacacaacagaacatgtttcagcattcatatcagtagttagatcagtttcctgtgacacact |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45059757 |
gattattctcaaaagtccttctaccaatatccaaatttgacacaacagaacatgtttcagcattcatatcagtagttagatcagtttcctgtgacacact |
45059658 |
T |
|
| Q |
112 |
cataatttgttgctgtctctcagtcttgaaaccattgttttcatacaaagctcttaaaattgcttgatcttgcataccacaaacagaacttggatattgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45059657 |
cataatttgttgctgtctctcagtcttgaaaccattgttttcatacaaagctcttaaaattgcttgatcttgcataccacaaacagaacttggatattgc |
45059558 |
T |
|
| Q |
212 |
aaattaaccgcagcttgattattagagtataatgaaccattagaagatgagattcttgggaaaaaatctagttgattatgtgaagaaacaccataaattg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45059557 |
aaattaaccgcagcttgattattagagtataatgaaccattagaagatgagattcttgggaaaaaatctagttgattatgtgaagaaataccataaattg |
45059458 |
T |
|
| Q |
312 |
agttgttgaatgaatcaaagatccctccttggtttctttgaacatcaattgagttggagaagcaggacacgtaagctgaatcattcaattgtttgatttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45059457 |
agttgttgaatgaatcaaagatccctccttggtttctttgaacatcaattgagttggagaagcaggacacgtaagctgaatcattcaattgtttgatttt |
45059358 |
T |
|
| Q |
412 |
cccaattgaattcgacgtatcagtaagtggtggtaaaacagaacaaccaaattcattaccaagtgaatccaacctcattataccagaaatatgtgnnnnn |
511 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45059357 |
cccaattgaattcgacgaatcagtaagtggtggtaaaacagaacaaccaaattcattaccaagtgaatccaacctcattataccagaaatatgtgttttt |
45059258 |
T |
|
| Q |
512 |
nncccagctgaactcttctg |
531 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45059257 |
ttcccagctgaactcttctg |
45059238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 596 - 668
Target Start/End: Complemental strand, 45059173 - 45059101
Alignment:
| Q |
596 |
ggttaagtacaataagaaaaacagataagaaagtttatagaagaatacctttgcagcttttggaagattgtga |
668 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45059173 |
ggttaagtacaataagaaaaacagagaagaaagtttatagaagaatacctttgcagcttttggaagattgtga |
45059101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 35363283 - 35363242
Alignment:
| Q |
115 |
aatttgttgctgtctctcagtcttgaaaccattgttttcata |
156 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
35363283 |
aatttgttgttatctctcagttttgaaaccattgttttcata |
35363242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University