View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8971_low_100 (Length: 300)
Name: NF8971_low_100
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 6816069 - 6815782
Alignment:
| Q |
5 |
gagatggacatcatccaactgagtagattgcaaaccaatatcagataaaagcacgctagatatacctaaccactttaaaacgaaggaccaaactacttcc |
104 |
Q |
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| T |
6816069 |
gagatggacaccatccaactgagaagattgcaaaccaatatcagatgaaagcacgctagatatccctaaccacttcaaaacgaaggaccaaactacttcc |
6815970 |
T |
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| Q |
105 |
cnnnnnnntcgaaatccaagaagacatgattcaccacattctaccatcccacaatcacccgagcataacaacgatcttggttgaagaactccatgatgaa |
204 |
Q |
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| T |
6815969 |
caaaaaaatcgaaatccaagaagacatgattcaccatattctaccatcccacaatcacccgagcataacaacgatcttggttgaagaactccatgatgaa |
6815870 |
T |
|
| Q |
205 |
ttaaattatatttagttgaaagtctttaattcaacaatcttcatactaaaagagacactttaaaagacaccactttattccatatgat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6815869 |
ttaaattatatttagttgaaagtctttaattcaacaatcttcatattaaaagagacactttaaaagacaccactttattccatatgat |
6815782 |
T |
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