View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8971_low_105 (Length: 290)
Name: NF8971_low_105
Description: NF8971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8971_low_105 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 8394822 - 8394994
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394822 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
8394921 |
T |
|
| Q |
197 |
tgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394922 |
tgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
8394994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 8406507 - 8406335
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406507 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
8406408 |
T |
|
| Q |
197 |
tgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406407 |
tgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
8406335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 8412627 - 8412455
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412627 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
8412528 |
T |
|
| Q |
197 |
tgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412527 |
tgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
8412455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 8434725 - 8434553
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434725 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
8434626 |
T |
|
| Q |
197 |
tgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434625 |
tgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
8434553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 8395065 - 8395237
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
8395065 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaaaatgattactctcactgctacaaccatgtctggagt |
8395164 |
T |
|
| Q |
197 |
tgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395165 |
tgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgct |
8395237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 256
Target Start/End: Complemental strand, 8431652 - 8431496
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
8431652 |
aaatgcatcacaacattggcgaac---gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatgtctggtgt |
8431556 |
T |
|
| Q |
197 |
tgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctct |
256 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||| ||||||| || |||||||| |
|
|
| T |
8431555 |
tgcagctgtcacaagtggggaagttgcaccacttttggctctgaaactatcttctgctct |
8431496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 8375373 - 8375475
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8375373 |
aaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaacatgattactcttactgctacaaccatgtctggtgt |
8375472 |
T |
|
| Q |
197 |
tgc |
199 |
Q |
| |
|
||| |
|
|
| T |
8375473 |
tgc |
8375475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 8439730 - 8439628
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||| | |||||| || ||||| || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8439730 |
aaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaacatgattactcttactgctacaaccatgtctggtgt |
8439631 |
T |
|
| Q |
197 |
tgc |
199 |
Q |
| |
|
||| |
|
|
| T |
8439630 |
tgc |
8439628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 8417848 - 8417746
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgt |
196 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||| ||||| | |||||| || || || || || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
8417848 |
aaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaacatgattactctcactgctacaaccatgtctggtct |
8417749 |
T |
|
| Q |
197 |
tgc |
199 |
Q |
| |
|
||| |
|
|
| T |
8417748 |
tgc |
8417746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 8368890 - 8368812
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcac |
175 |
Q |
| |
|
|||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| || || ||||| |||||||| |
|
|
| T |
8368890 |
aaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8368812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 8400520 - 8400598
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcac |
175 |
Q |
| |
|
|||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| || || ||||| |||||||| |
|
|
| T |
8400520 |
aaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8400598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 8422097 - 8422175
Alignment:
| Q |
97 |
aaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcac |
175 |
Q |
| |
|
|||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| || || ||||| |||||||| |
|
|
| T |
8422097 |
aaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8422175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University